PDB entry 3gvd

View 3gvd on RCSB PDB site
Description: Crystal Structure of Serine Acetyltransferase CysE from Yersinia pestis
Class: transferase
Keywords: left-handed beta-helix, Structural Genomics of National Institute of Allergy and Infectious Diseases, Acyltransferase, Transferase, Center for Structural Genomics of Infectious Diseases, CSGID
Deposited on 2009-03-30, released 2009-05-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.202
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Serine acetyltransferase
    Species: Yersinia pestis [TaxId:632]
    Gene: cysE, YPO0070
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gvda_
  • Chain 'B':
    Compound: Serine acetyltransferase
    Species: Yersinia pestis [TaxId:632]
    Gene: cysE, YPO0070
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0WKM4 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3gvdb1, d3gvdb2
  • Chain 'C':
    Compound: Serine acetyltransferase
    Species: Yersinia pestis [TaxId:632]
    Gene: cysE, YPO0070
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0WKM4 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.08: d3gvdc1, d3gvdc2
  • Chain 'D':
    Compound: Serine acetyltransferase
    Species: Yersinia pestis [TaxId:632]
    Gene: cysE, YPO0070
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gvdd_
  • Chain 'E':
    Compound: Serine acetyltransferase
    Species: Yersinia pestis [TaxId:632]
    Gene: cysE, YPO0070
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gvde_
  • Chain 'F':
    Compound: Serine acetyltransferase
    Species: Yersinia pestis [TaxId:632]
    Gene: cysE, YPO0070
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gvdf_
  • Chain 'G':
    Compound: Serine acetyltransferase
    Species: Yersinia pestis [TaxId:632]
    Gene: cysE, YPO0070
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gvdg_
  • Chain 'H':
    Compound: Serine acetyltransferase
    Species: Yersinia pestis [TaxId:632]
    Gene: cysE, YPO0070
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0WKM4 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.08: d3gvdh1, d3gvdh2
  • Chain 'I':
    Compound: Serine acetyltransferase
    Species: Yersinia pestis [TaxId:632]
    Gene: cysE, YPO0070
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0WKM4 (3-End)
      • expression tag (0-2)
    Domains in SCOPe 2.08: d3gvdi1, d3gvdi2
  • Chain 'J':
    Compound: Serine acetyltransferase
    Species: Yersinia pestis [TaxId:632]
    Gene: cysE, YPO0070
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gvdj_
  • Chain 'K':
    Compound: Serine acetyltransferase
    Species: Yersinia pestis [TaxId:632]
    Gene: cysE, YPO0070
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gvdk_
  • Chain 'L':
    Compound: Serine acetyltransferase
    Species: Yersinia pestis [TaxId:632]
    Gene: cysE, YPO0070
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gvdl_
  • Heterogens: SO4, ACY, CYS, GOL, PG5, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3gvdA (A:)
    snamsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpi
    mpaiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrig
    hwlwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsil
    qsvtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaa
    gvparivgkpesdkpsldmdqhfngsiqgfeygdgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >3gvdA (A:)
    msseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpimpa
    iairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrighwl
    waqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsilqsv
    tlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaagvp
    arivgkpesdkpsldmdqhfngsiqgfeygd
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3gvdB (B:)
    snamsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpi
    mpaiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrig
    hwlwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsil
    qsvtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaa
    gvparivgkpesdkpsldmdqhfngsiqgfeygdgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >3gvdB (B:)
    namsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpim
    paiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrigh
    wlwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsilq
    svtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaag
    vparivgkpesdkpsldmdqhfngs
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3gvdC (C:)
    snamsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpi
    mpaiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrig
    hwlwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsil
    qsvtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaa
    gvparivgkpesdkpsldmdqhfngsiqgfeygdgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >3gvdC (C:)
    amsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpimp
    aiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrighw
    lwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsilqs
    vtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaagv
    parivgkpesdkpsldmdqhfn
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3gvdD (D:)
    snamsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpi
    mpaiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrig
    hwlwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsil
    qsvtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaa
    gvparivgkpesdkpsldmdqhfngsiqgfeygdgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >3gvdD (D:)
    msseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpimpa
    iairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrighwl
    waqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsilqsv
    tlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaagvp
    arivgkpesdkpsldmdqhfng
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3gvdE (E:)
    snamsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpi
    mpaiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrig
    hwlwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsil
    qsvtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaa
    gvparivgkpesdkpsldmdqhfngsiqgfeygdgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >3gvdE (E:)
    msseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpimpa
    iairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrighwl
    waqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsilqsv
    tlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaagvp
    arivgkpesdkpsldmdqhfngs
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3gvdF (F:)
    snamsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpi
    mpaiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrig
    hwlwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsil
    qsvtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaa
    gvparivgkpesdkpsldmdqhfngsiqgfeygdgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >3gvdF (F:)
    msseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpimpa
    iairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrighwl
    waqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsilqsv
    tlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaagvp
    arivgkpesdkpsldmdqhfn
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3gvdG (G:)
    snamsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpi
    mpaiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrig
    hwlwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsil
    qsvtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaa
    gvparivgkpesdkpsldmdqhfngsiqgfeygdgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >3gvdG (G:)
    msseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpimpa
    iairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrighwl
    waqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsilqsv
    tlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaagvp
    arivgkpesdkpsldmdqhfngs
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3gvdH (H:)
    snamsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpi
    mpaiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrig
    hwlwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsil
    qsvtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaa
    gvparivgkpesdkpsldmdqhfngsiqgfeygdgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >3gvdH (H:)
    amsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpimp
    aiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrighw
    lwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsilqs
    vtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaagv
    parivgkpesdkpsldmdqhf
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >3gvdI (I:)
    snamsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpi
    mpaiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrig
    hwlwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsil
    qsvtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaa
    gvparivgkpesdkpsldmdqhfngsiqgfeygdgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >3gvdI (I:)
    snamsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpi
    mpaiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrig
    hwlwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsil
    qsvtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaa
    gvparivgkpesdkpsldmdqhfngsiqgfey
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >3gvdJ (J:)
    snamsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpi
    mpaiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrig
    hwlwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsil
    qsvtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaa
    gvparivgkpesdkpsldmdqhfngsiqgfeygdgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >3gvdJ (J:)
    msseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpimpa
    iairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrighwl
    waqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsilqsv
    tlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaagvp
    arivgkpesdkpsldmdqhfn
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >3gvdK (K:)
    snamsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpi
    mpaiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrig
    hwlwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsil
    qsvtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaa
    gvparivgkpesdkpsldmdqhfngsiqgfeygdgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >3gvdK (K:)
    msseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpimpa
    iairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrighwl
    waqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsilqsv
    tlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaagvp
    arivgkpesdkpsldmdqhf
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >3gvdL (L:)
    snamsseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpi
    mpaiairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrig
    hwlwaqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsil
    qsvtlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaa
    gvparivgkpesdkpsldmdqhfngsiqgfeygdgi
    

    Sequence, based on observed residues (ATOM records): (download)
    >3gvdL (L:)
    msseeleqvwsniksearalaecepmlasffhatllkhenlgsalsyilanklanpimpa
    iairevveeayrsdahmivsaardilavrlrdpavdkystpllylkgfhalqayrighwl
    waqdrkalaiylqnqvsvafgvdihpaatigcgimldhatgivigetavvendvsilqsv
    tlggtgktsgdrhpkiregvmigagakilgnievgrgakigagsvvlqsvpahttaagvp
    arivgkpesdkpsldmdqhfn