PDB entry 3gr9

View 3gr9 on RCSB PDB site
Description: Crystal structure of ColD H188K S187N
Class: transferase
Keywords: colitose, perosamine, PLP, aminotransferase, o-antigen, lipopolysaccharide, TRANSFERASE
Deposited on 2009-03-25, released 2009-06-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-05-03, with a file datestamp of 2017-04-28.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ColD
    Species: Escherichia coli [TaxId:562]
    Gene: wbdK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F118 (Start-389)
      • engineered (188-189)
    Domains in SCOPe 2.08: d3gr9a_
  • Chain 'B':
    Compound: ColD
    Species: Escherichia coli [TaxId:562]
    Gene: wbdK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F118 (Start-389)
      • engineered (188-189)
    Domains in SCOPe 2.08: d3gr9b_
  • Chain 'C':
    Compound: ColD
    Species: Escherichia coli [TaxId:562]
    Gene: wbdK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F118 (2-389)
      • engineered (188-189)
    Domains in SCOPe 2.08: d3gr9c_
  • Chain 'D':
    Compound: ColD
    Species: Escherichia coli [TaxId:562]
    Gene: wbdK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F118 (Start-389)
      • engineered (188-189)
    Domains in SCOPe 2.08: d3gr9d_
  • Chain 'E':
    Compound: ColD
    Species: Escherichia coli [TaxId:562]
    Gene: wbdK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F118
      • engineered (188-189)
    Domains in SCOPe 2.08: d3gr9e_
  • Chain 'F':
    Compound: ColD
    Species: Escherichia coli [TaxId:562]
    Gene: wbdK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F118 (Start-389)
      • engineered (188-189)
    Domains in SCOPe 2.08: d3gr9f_
  • Chain 'G':
    Compound: ColD
    Species: Escherichia coli [TaxId:562]
    Gene: wbdK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F118 (Start-389)
      • engineered (188-189)
    Domains in SCOPe 2.08: d3gr9g_
  • Chain 'H':
    Compound: ColD
    Species: Escherichia coli [TaxId:562]
    Gene: wbdK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F118 (Start-389)
      • engineered (188-189)
    Domains in SCOPe 2.08: d3gr9h_
  • Heterogens: AKG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3gr9A (A:)
ghminyplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgst
anllmiaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidies
lkeavtdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfgl
mgtfssfynkhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfee
sfkfvlpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetge
sswfgfsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdn
aeyldknglfvgnhqielfdeidylrevlk

    Sequence, based on observed residues (ATOM records): (download) 
    >3gr9A (A:)
plasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgstanllmi
aalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidieslkeavt
dstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfglmgtfss
fynkhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfeesfkfvl
pgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetgesswfgf
sfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdnaeyldk
nglfvgnhqielfdeidylrevlk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3gr9B (B:)
ghminyplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgst
anllmiaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidies
lkeavtdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfgl
mgtfssfynkhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfee
sfkfvlpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetge
sswfgfsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdn
aeyldknglfvgnhqielfdeidylrevlk

    Sequence, based on observed residues (ATOM records): (download) 
    >3gr9B (B:)
yplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgstanllm
iaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidieslkeav
tdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfglmgtfs
sfynkhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfeesfkfv
lpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetgesswfg
fsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdnaeyld
knglfvgnhqielfdeidylrevlk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3gr9C (C:)
ghminyplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgst
anllmiaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidies
lkeavtdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfgl
mgtfssfynkhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfee
sfkfvlpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetge
sswfgfsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdn
aeyldknglfvgnhqielfdeidylrevlk

    Sequence, based on observed residues (ATOM records): (download) 
    >3gr9C (C:)
minyplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgstan
llmiaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidieslk
eavtdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfglmg
tfssfynkhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfeesf
kfvlpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetgess
wfgfsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdnae
yldknglfvgnhqielfdeidylrevlk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3gr9D (D:)
ghminyplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgst
anllmiaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidies
lkeavtdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfgl
mgtfssfynkhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfee
sfkfvlpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetge
sswfgfsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdn
aeyldknglfvgnhqielfdeidylrevlk

    Sequence, based on observed residues (ATOM records): (download) 
    >3gr9D (D:)
sstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgstanllmiaal
fftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidieslkeavtdst
kailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfglmgtfssfyn
khiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfeesfkfvlpgy
nvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetgesswfgfsfi
ikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdnaeyldkngl
fvgnhqielfdeidylrevlk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3gr9E (E:)
ghminyplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgst
anllmiaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidies
lkeavtdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfgl
mgtfssfynkhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfee
sfkfvlpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetge
sswfgfsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdn
aeyldknglfvgnhqielfdeidylrevlk

    Sequence, based on observed residues (ATOM records): (download) 
    >3gr9E (E:)
plasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgstanllmi
aalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidieslkeavt
dstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfglmgtfss
fynkhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfeesfkfvl
pgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetgesswfgf
sfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdnaeyldk
nglfvgnhqielfdeidylrevl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3gr9F (F:)
ghminyplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgst
anllmiaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidies
lkeavtdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfgl
mgtfssfynkhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfee
sfkfvlpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetge
sswfgfsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdn
aeyldknglfvgnhqielfdeidylrevlk

    Sequence, based on observed residues (ATOM records): (download) 
    >3gr9F (F:)
nyplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgstanll
miaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidieslkea
vtdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfglmgtf
ssfynkhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfeesfkf
vlpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetgesswf
gfsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdnaeyl
dknglfvgnhqielfdeidylrevlk

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3gr9G (G:)
ghminyplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgst
anllmiaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidies
lkeavtdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfgl
mgtfssfynkhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfee
sfkfvlpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetge
sswfgfsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdn
aeyldknglfvgnhqielfdeidylrevlk

    Sequence, based on observed residues (ATOM records): (download) 
    >3gr9G (G:)
inyplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgstanl
lmiaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidieslke
avtdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfglmgt
fssfynkhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfeesfk
fvlpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetgessw
fgfsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdnaey
ldknglfvgnhqielfdeidylrevlk

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3gr9H (H:)
ghminyplasstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgst
anllmiaalfftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidies
lkeavtdstkailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfgl
mgtfssfynkhiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfee
sfkfvlpgynvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetge
sswfgfsfiikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdn
aeyldknglfvgnhqielfdeidylrevlk

    Sequence, based on observed residues (ATOM records): (download) 
    >3gr9H (H:)
sstwddleykaiqsvldskmftmgeyvkqyetqfaktfgskyavmvssgstanllmiaal
fftkkprlkkgdeiivpavswsttyyplqqyglrvkfvdidintlnidieslkeavtdst
kailtvnllgnpnnfdeinkiiggrdiilledncesmgatfnnkcagtfglmgtfssfyn
khiatmeggcivtddeeiyhillcirahgwtrnlpkknkvtgvksddqfeesfkfvlpgy
nvrplemsgaigieqlkklprfisvrrknaeyfldkfkdhpyldvqqetgesswfgfsfi
ikkdsgvirkqlvenlnsagiecrpivtgnflkntdvlkyfdytvhnnvdnaeyldkngl
fvgnhqielfdeidylrevlk