PDB entry 3gpq

View 3gpq on RCSB PDB site
Description: Crystal structure of macro domain of Chikungunya virus in complex with RNA
Deposited on 2009-03-23, released 2009-07-21
The last revision was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.218
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: non-structural protein 3
    Species: Chikungunya virus [TaxId:371094]
    Gene: NSP3
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: non-structural protein 3
    Species: Chikungunya virus [TaxId:371094]
    Gene: NSP3
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: non-structural protein 3
    Species: Chikungunya virus [TaxId:371094]
    Gene: NSP3
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: non-structural protein 3
    Species: Chikungunya virus [TaxId:371094]
    Gene: NSP3
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: RNA (5'-r(*ap*ap*a)-3')
  • Chain 'F':
    Compound: RNA (5'-r(*ap*ap*a)-3')
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3gpqA (A:)
mkhhhhhhapsyrvkrmdiakndeecvvnaanprglpgdgvckavykkwpesfknsatpv
gtaktvmcgtypvihavgpnfsnysesegdrelaaayrevakevtrlgvnsvaipllstg
vysggkdrltqslnhlftamdstdadvviycrdkewekkiseaiqmrt

    Sequence, based on observed residues (ATOM records):
    >3gpqA (A:)
apsyrvkrmdiakndeecvvnaanprglpgdgvckavykkwpesfknsatpvgtaktvmc
gtypvihavgpnfsnysesegdrelaaayrevakevtrlgvnsvaipllstgvysggkdr
ltqslnhlftamdstdadvviycrdkewekkiseaiqmrt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3gpqB (B:)
mkhhhhhhapsyrvkrmdiakndeecvvnaanprglpgdgvckavykkwpesfknsatpv
gtaktvmcgtypvihavgpnfsnysesegdrelaaayrevakevtrlgvnsvaipllstg
vysggkdrltqslnhlftamdstdadvviycrdkewekkiseaiqmrt

    Sequence, based on observed residues (ATOM records):
    >3gpqB (B:)
apsyrvkrmdiakndeecvvnaanprglpgdgvckavykkwpesfknsatpvgtaktvmc
gtypvihavgpnfsnysesegdrelaaayrevakevtrlgvnsvaipllstgvysggkdr
ltqslnhlftamdstdadvviycrdkewekkiseaiqmrt

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3gpqC (C:)
mkhhhhhhapsyrvkrmdiakndeecvvnaanprglpgdgvckavykkwpesfknsatpv
gtaktvmcgtypvihavgpnfsnysesegdrelaaayrevakevtrlgvnsvaipllstg
vysggkdrltqslnhlftamdstdadvviycrdkewekkiseaiqmrt

    Sequence, based on observed residues (ATOM records):
    >3gpqC (C:)
apsyrvkrmdiakndeecvvnaanpglckavykkwpesfknsatpvgtavmcgtypviha
vgpnfsnysesegdrelaaayrevakevtrlgvnsaipllstgvysggkdrltqslnhlf
tamdstdadvviycrdkewekkiseaiqmr

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3gpqD (D:)
mkhhhhhhapsyrvkrmdiakndeecvvnaanprglpgdgvckavykkwpesfknsatpv
gtaktvmcgtypvihavgpnfsnysesegdrelaaayrevakevtrlgvnsvaipllstg
vysggkdrltqslnhlftamdstdadvviycrdkewekkiseaiqmrt

    Sequence, based on observed residues (ATOM records):
    >3gpqD (D:)
psyrvkrmdiakndeecvvnaanprglpgdgvckavykkwpesfknsatpvgtaktvmcg
typvihavgpnfsnseegdrelaaayrevakevtrlgvnsvaipllstgvysggkdrltq
slnhlftamdstdvviycrdkewekkis

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.