PDB entry 3gp8

View 3gp8 on RCSB PDB site
Description: Crystal structure of the binary complex of RecD2 with DNA
Deposited on 2009-03-23, released 2009-06-16
The last revision was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.23
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Exodeoxyribonuclease V, subunit RecD, putative
    Species: Deinococcus radiodurans R1 [TaxId:243230]
    Gene: DR_1902, recD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RT63 (Start-565)
      • expression tag (566)
  • Chain 'X':
    Compound: 5'-d(*tp*tp*tp*tp*tp*t*tp*tp*tp*tp*tp*tp*tp*t)-3'
    Species: synthetic, synthetic
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3gp8A (A:)
    msqqglerrllaglqglgltinqaqravkhfgadaldrlekdlftltevegigfltadkl
    wqarggalddprrltaaavyalqlagtqaghsflprsraekgvvhytrvtpgqarlavet
    avelgrlseddsplfaaeaaatgegriylphvlraekklaslirtllatppadgagnddw
    avpkkarkglseeqasvldqlaghrlvvltggpgtgkstttkavadlaeslglevglcap
    tgkaarrlgevtgrtastvhrllgygpqgfrhnhlepapydllivdevsmmgdalmlsll
    aavppgarvllvgdtdqlppvdaglpllalaqaaptikltqvyrqaaknpiiqaahgllh
    geapawgdkrlnlteiepdggarrvalmvrelggpgavqvltpmrkgplgmdhlnyhlqa
    lfnpgeggvriaegearpgdtvvqtkndynneifngtlgmvlkaegarltvdfdgnvvel
    tgaelfnlqlgyaltvhraqgsewgtvlgvlheahmpmlsrnlvytaltrardrffsags
    asawqiaaarqrearntallerirahlehhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >3gp8A (A:)
    qglerrllaglqglgltinqaqravkhfgadaldrlekdlftltevegigfltadklwqa
    rggalddprrltaaavyalqlagtqaghsflprsraekgvvhytrvtpgqarlavetave
    lgrlseddsplfaeaaatgegriylphvlraekklaslirtllatppadddwavpkkark
    glseeqasvldqlaghrlvvltggpgtgkstttkavadlaeslglevglcaptgkaarrl
    gevtgrtastvhrllgygpqgfrhnhlepapydllivdevsmmgdalmlsllaavppgar
    vllvgdtdqlppvdaglpllalaqaaptikltqvyrqaaknpiiqaahgllhgeapawgd
    krlnlteiepdggarrvalmvrelggpgavqvltpmrkgplgmdhlnyhlqalfnpgegg
    vriaegearpgdtvvqtknifngtlgmvlkaegarltvdnvveltgaelfnlqlgyaltv
    hraqgsewgtvlgvlheahmpmlsrnlvytaltrardrffsagsasawqiaaarqrearn
    tallerirahl
    

  • Chain 'X':
    No sequence available.