PDB entry 3gos

View 3gos on RCSB PDB site
Description: The crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase from Yersinia pestis CO92
Class: transferase
Keywords: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, Acyltransferase, Amino-acid biosynthesis, Diaminopimelate biosynthesis, Lysine biosynthesis, Transferase, Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID
Deposited on 2009-03-19, released 2009-05-12
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.23
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
    Species: Yersinia pestis [TaxId:632]
    Gene: dapD, gi: 16121341, y3140, YPO1041, YP_2810
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZH69 (2-275)
      • expression tag (0-1)
    Domains in SCOPe 2.05: d3gosa_
  • Chain 'B':
    Compound: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
    Species: Yersinia pestis [TaxId:632]
    Gene: dapD, gi: 16121341, y3140, YPO1041, YP_2810
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZH69 (2-275)
      • expression tag (0-1)
    Domains in SCOPe 2.05: d3gosb_
  • Chain 'C':
    Compound: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
    Species: Yersinia pestis [TaxId:632]
    Gene: dapD, gi: 16121341, y3140, YPO1041, YP_2810
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZH69 (2-275)
      • expression tag (0-1)
    Domains in SCOPe 2.05: d3gosc_
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3gosA (A:)
qsmqqlqnvietaferraditpanvdtvtreaithvidlldtgalrvaekidgqwvthqw
lkkavllsfrindnqvmegaetryydkvpmkfagydearfqregfrvvppatvrkgafia
rntvlmpsyvnigafvdegtmvdtwatvgscaqigknvhlsggvgiggvleplqanptii
edncfvgarsevvegviveegsvismgvfigqstriydretgevhygrvpagsvvvsgnl
pskdgsyslycavivkkvdaktrskvginellrtid

    Sequence, based on observed residues (ATOM records): (download) 
    >3gosA (A:)
qsmqqlqnvietaferraditpanvdtvtreaithvidlldtgalrvaekidgqwvthqw
lkkavllsfrindnqvmegaetryydkvpmkfagydearfqregfrvvppatvrkgafia
rntvlmpsyvnigafvdegtmvdtwatvgscaqigknvhlsggvgiggvleplqanptii
edncfvgarsevvegviveegsvismgvfigqstriydretgevhygrvpagsvvvsgnl
pskdgsyslycavivkkvdaginellrtid

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3gosB (B:)
qsmqqlqnvietaferraditpanvdtvtreaithvidlldtgalrvaekidgqwvthqw
lkkavllsfrindnqvmegaetryydkvpmkfagydearfqregfrvvppatvrkgafia
rntvlmpsyvnigafvdegtmvdtwatvgscaqigknvhlsggvgiggvleplqanptii
edncfvgarsevvegviveegsvismgvfigqstriydretgevhygrvpagsvvvsgnl
pskdgsyslycavivkkvdaktrskvginellrtid

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3gosC (C:)
qsmqqlqnvietaferraditpanvdtvtreaithvidlldtgalrvaekidgqwvthqw
lkkavllsfrindnqvmegaetryydkvpmkfagydearfqregfrvvppatvrkgafia
rntvlmpsyvnigafvdegtmvdtwatvgscaqigknvhlsggvgiggvleplqanptii
edncfvgarsevvegviveegsvismgvfigqstriydretgevhygrvpagsvvvsgnl
pskdgsyslycavivkkvdaktrskvginellrtid