PDB entry 3glm

View 3glm on RCSB PDB site
Description: Glutaconyl-coA decarboxylase A subunit from Clostridium symbiosum co-crystallized with crotonyl-coA
Class: lyase
Keywords: glutaconyl-CoA decarboxylase, sodium ion transport, biotin, glutamate fermentation, LYASE
Deposited on 2009-03-12, released 2009-07-28
The last revision prior to the SCOPe 2.04 freeze date was dated 2014-02-05, with a file datestamp of 2014-01-31.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.194
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutaconyl-CoA decarboxylase subunit A
    Species: Clostridium symbiosum [TaxId:1512]
    Gene: GCDA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3glma1, d3glma2
  • Chain 'B':
    Compound: Glutaconyl-CoA decarboxylase subunit A
    Species: Clostridium symbiosum [TaxId:1512]
    Gene: GCDA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3glmb1, d3glmb2
  • Chain 'C':
    Compound: Glutaconyl-CoA decarboxylase subunit A
    Species: Clostridium symbiosum [TaxId:1512]
    Gene: GCDA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3glmc1, d3glmc2
  • Chain 'D':
    Compound: Glutaconyl-CoA decarboxylase subunit A
    Species: Clostridium symbiosum [TaxId:1512]
    Gene: GCDA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3glmd1, d3glmd2
  • Heterogens: CL, COO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3glmA (A:)
mnmysmpgyfqnmptigkelvnpnpeneqeikavesdihesikkaldagitseeklnerg
qlsamqrinalidpgtwcplnslfnpennkfgttnivnglgrvdgkwvyivasdnkkmag
awvpgqaenlircsdaakmmhlpliyllncsgvefpnqdkvypnrrgggtpffrnselnq
lgipvivgiygtnpagggyhsisptiliahqdanmavggagilsgmnpkgyiddeaaeqi
iaaqiensklkvpapgsvpihydetgffrevyqndlgvidgikkyisylpaynleffrvd
tpkapqlpaedlysiipmnqkrpydiyeviarlfdnsefseykkgygpemvtglakvngl
lvgvianvqgllmnypeykqnsvgiggklyrqglikmnefvtlcardripliwlqdttgi
dvgdeaekaellglgqsliysiensklpsleitirkasaaahyvlggpqgnntnvfsigt
gaceyyvmpgetaanamysrklvkakkagedlqpiigkmndmiqmytdksrpkyctekgm
vdeivdmtevrpyiqafteaayqnpqsicpmhqmltprstrefetfgk

    Sequence, based on observed residues (ATOM records): (download) 
    >3glmA (A:)
mysmpgyfqnmptigkelvnpnpeneqeikavesdihesikkaldagitseeklnergql
samqrinalidpgtwcplnslfnpennkfgttnivnglgrvdgkwvyivasdnkkmagaw
vpgqaenlircsdaakmmhlpliyllncsgvefpnqdkvypnrrgggtpffrnselnqlg
ipvivgiygtnpagggyhsisptiliahqdanmavggagaeqiiaaqiensklkvpapgs
vpihydetgffrevyqndlgvidgikkyisylpaynleffrvdtpkapqlpaedlysiip
mnqkrpydiyeviarlfdnsefseykkgygpemvtglakvngllvgvianvqgllmnype
ykqnsvgiggklyrqglikmnefvtlcardripliwlqdttgidvgdeaekaellglgqs
liysiensklpsleitirkasaaahyvlggpqgnntnvfsigtgaceyyvmpgetaanam
ysrklvkaqpiigkmndmiqmytdksrpkyctekgmvdeivdmtevrpyiqafteaayqn
pqsicpmhqmltprstrefetf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3glmB (B:)
mnmysmpgyfqnmptigkelvnpnpeneqeikavesdihesikkaldagitseeklnerg
qlsamqrinalidpgtwcplnslfnpennkfgttnivnglgrvdgkwvyivasdnkkmag
awvpgqaenlircsdaakmmhlpliyllncsgvefpnqdkvypnrrgggtpffrnselnq
lgipvivgiygtnpagggyhsisptiliahqdanmavggagilsgmnpkgyiddeaaeqi
iaaqiensklkvpapgsvpihydetgffrevyqndlgvidgikkyisylpaynleffrvd
tpkapqlpaedlysiipmnqkrpydiyeviarlfdnsefseykkgygpemvtglakvngl
lvgvianvqgllmnypeykqnsvgiggklyrqglikmnefvtlcardripliwlqdttgi
dvgdeaekaellglgqsliysiensklpsleitirkasaaahyvlggpqgnntnvfsigt
gaceyyvmpgetaanamysrklvkakkagedlqpiigkmndmiqmytdksrpkyctekgm
vdeivdmtevrpyiqafteaayqnpqsicpmhqmltprstrefetfgk

    Sequence, based on observed residues (ATOM records): (download) 
    >3glmB (B:)
mysmpgyfqnmptigkelvnpnpeneqeikavesdihesikkaldagitseeklnergql
samqrinalidpgtwcplnslfnpennkfgttnivnglgrvdgkwvyivasdnkkmagaw
vpgqaenlircsdaakmmhlpliyllncsgvefpnqdkvypnrrgggtpffrnselnqlg
ipvivgiygtnpagggyhsisptiliahqdanmavggagaeqiiaaqiensklkvpapgs
vpihydetgffrevyqndlgvidgikkyisylpaynleffrvdtpkapqlpaedlysiip
mnqkrpydiyeviarlfdnsefseykkgygpemvtglakvngllvgvianvqgllmnype
ykqnsvgiggklyrqglikmnefvtlcardripliwlqdttgidvgdeaekaellglgqs
liysiensklpsleitirkasaaahyvlggpqgnntnvfsigtgaceyyvmpgetaanam
ysrklvkaqpiigkmndmiqmytdksrpkyctekgmvdeivdmtevrpyiqafteaayqn
pqsicpmhqmltprstrefetf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3glmC (C:)
mnmysmpgyfqnmptigkelvnpnpeneqeikavesdihesikkaldagitseeklnerg
qlsamqrinalidpgtwcplnslfnpennkfgttnivnglgrvdgkwvyivasdnkkmag
awvpgqaenlircsdaakmmhlpliyllncsgvefpnqdkvypnrrgggtpffrnselnq
lgipvivgiygtnpagggyhsisptiliahqdanmavggagilsgmnpkgyiddeaaeqi
iaaqiensklkvpapgsvpihydetgffrevyqndlgvidgikkyisylpaynleffrvd
tpkapqlpaedlysiipmnqkrpydiyeviarlfdnsefseykkgygpemvtglakvngl
lvgvianvqgllmnypeykqnsvgiggklyrqglikmnefvtlcardripliwlqdttgi
dvgdeaekaellglgqsliysiensklpsleitirkasaaahyvlggpqgnntnvfsigt
gaceyyvmpgetaanamysrklvkakkagedlqpiigkmndmiqmytdksrpkyctekgm
vdeivdmtevrpyiqafteaayqnpqsicpmhqmltprstrefetfgk

    Sequence, based on observed residues (ATOM records): (download) 
    >3glmC (C:)
mysmpgyfqnmptigkelvnpnpeneqeikavesdihesikkaldagitseeklnergql
samqrinalidpgtwcplnslfnpennkfgttnivnglgrvdgkwvyivasdnkkmagaw
vpgqaenlircsdaakmmhlpliyllncsgvefpnqdkvypnrrgggtpffrnselnqlg
ipvivgiygtnpagggyhsisptiliahqdanmavggagaeqiiaaqiensklkvpapgs
vpihydetgffrevyqndlgvidgikkyisylpaynleffrvdtpkapqlpaedlysiip
mnqkrpydiyeviarlfdnsefseykkgygpemvtglakvngllvgvianvqgllmnype
ykqnsvgiggklyrqglikmnefvtlcardripliwlqdttgidvgdeaekaellglgqs
liysiensklpsleitirkasaaahyvlggpqgnntnvfsigtgaceyyvmpgetaanam
ysrkqpiigkmndmiqmytdksrpkyctekgmvdeivdmtevrpyiqafteaayqnpqsi
cpmhqmltprstrefetf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3glmD (D:)
mnmysmpgyfqnmptigkelvnpnpeneqeikavesdihesikkaldagitseeklnerg
qlsamqrinalidpgtwcplnslfnpennkfgttnivnglgrvdgkwvyivasdnkkmag
awvpgqaenlircsdaakmmhlpliyllncsgvefpnqdkvypnrrgggtpffrnselnq
lgipvivgiygtnpagggyhsisptiliahqdanmavggagilsgmnpkgyiddeaaeqi
iaaqiensklkvpapgsvpihydetgffrevyqndlgvidgikkyisylpaynleffrvd
tpkapqlpaedlysiipmnqkrpydiyeviarlfdnsefseykkgygpemvtglakvngl
lvgvianvqgllmnypeykqnsvgiggklyrqglikmnefvtlcardripliwlqdttgi
dvgdeaekaellglgqsliysiensklpsleitirkasaaahyvlggpqgnntnvfsigt
gaceyyvmpgetaanamysrklvkakkagedlqpiigkmndmiqmytdksrpkyctekgm
vdeivdmtevrpyiqafteaayqnpqsicpmhqmltprstrefetfgk

    Sequence, based on observed residues (ATOM records): (download) 
    >3glmD (D:)
mysmpgyfqnmptigkelvnpnpeneqeikavesdihesikkaldagitseeklnergql
samqrinalidpgtwcplnslfnpennkfgttnivnglgrvdgkwvyivasdnkkmagaw
vpgqaenlircsdaakmmhlpliyllncsgvefpnqdkvypnrrgggtpffrnselnqlg
ipvivgiygtnpagggyhsisptiliahqdanmavggagaeqiiaaqiensklkvpapgs
vpihydetgffrevyqndlgvidgikkyisylpaynleffrvdtpkapqlpaedlysiip
mnqkrpydiyeviarlfdnsefseykkgygpemvtglakvngllvgvianvqgllmnype
ykqnsvgiggklyrqglikmnefvtlcardripliwlqdttgidvgdeaekaellglgqs
liysiensklpsleitirkasaaahyvlggpqgnntnvfsigtgaceyyvmpgetaanam
ysrklvkaqpiigkmndmiqmytdksrpkyctekgmvdeivdmtevrpyiqafteaayqn
pqsicpmhqmltprstrefetf