PDB entry 3gkw
View 3gkw on RCSB PDB site
Description: Crystal structure of the Fab fragment of Nimotuzumab. An anti-epidermal growth factor receptor antibody
Class: immune system, antitumor protein
Keywords: Immunoglobulin fold, Displaced strictly conserved TRP 103 following Kabat numbering, IMMUNE SYSTEM, ANTITUMOR PROTEIN
Deposited on
2009-03-11, released
2009-08-04
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-05-16, with a file datestamp of
2018-05-11.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: Heavy chain of the antibody Nimotuzumab
Species: Homo sapiens [TaxId:9606]
Gene: Immonoglobulin
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3gkwh1, d3gkwh2 - Chain 'L':
Compound: Light chain of the antibody Nimotuzumab
Species: Homo sapiens [TaxId:9606]
Gene: Immonoglobulin
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3gkwl1, d3gkwl2 - Heterogens: PEG, 1PE, HOH
PDB Chain Sequences:
- Chain 'H':
Sequence, based on SEQRES records: (download)
>3gkwH (H:)
qvqlqqsgaevkkpgssvkvsckasgytftnyyiywvrqapgqglewigginptsggsnf
nekfktrvtitadessttaymelsslrsedtafyfctrqglwfdsdgrgfdfwgqgttvt
vssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavl
qssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvp
Sequence, based on observed residues (ATOM records): (download)
>3gkwH (H:)
qsgaevkkpgssvkvsckasgytftnyyiywvrqapgqglewigginptsggsnfnekfk
trvtitadessttaymelsslrsedtafyfctrqglwfdsdgrgfdfwgqgttvtvssas
tkgpsvfplapaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslssvvtv
pqtyicnvnhkpsntkvdkkvp
- Chain 'L':
Sequence, based on SEQRES records: (download)
>3gkwL (L:)
diqmtqspsslsasvgdrvtitcrssqnivhsngntyldwyqqtpgkapklliykvsnrf
sgvpsrfsgsgsgtdftftisslqpediatyycfqyshvpwtfgqgtklqitrevaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>3gkwL (L:)
diqmtqspsslsasvgdrvtitcrssqnivhsngntyldwyqqtpgkapklliykvsnrf
sgvpsrfsgsgsgtdftftisslqpediatyycfqyshvpwtfgqgtklqitrevaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwqsgnsqesvteqdskdstyslsstltl
skadycevthqglsspvtk