PDB entry 3gk0

View 3gk0 on RCSB PDB site
Description: Crystal structure of pyridoxal phosphate biosynthetic protein from Burkholderia pseudomallei
Class: transferase
Keywords: deCODE, SSGCID, NIAID, SBRI, Pyridoxine biosynthesis, Transferase, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease
Deposited on 2009-03-09, released 2009-03-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 2.28 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: pyridoxine 5'-phosphate synthase
    Species: Burkholderia pseudomallei [TaxId:320372]
    Gene: PDXJ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gk0a_
  • Chain 'B':
    Compound: pyridoxine 5'-phosphate synthase
    Species: Burkholderia pseudomallei [TaxId:320372]
    Gene: PDXJ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gk0b_
  • Chain 'C':
    Compound: pyridoxine 5'-phosphate synthase
    Species: Burkholderia pseudomallei [TaxId:320372]
    Gene: PDXJ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gk0c_
  • Chain 'D':
    Compound: pyridoxine 5'-phosphate synthase
    Species: Burkholderia pseudomallei [TaxId:320372]
    Gene: PDXJ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gk0d_
  • Chain 'E':
    Compound: pyridoxine 5'-phosphate synthase
    Species: Burkholderia pseudomallei [TaxId:320372]
    Gene: PDXJ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gk0e_
  • Chain 'F':
    Compound: pyridoxine 5'-phosphate synthase
    Species: Burkholderia pseudomallei [TaxId:320372]
    Gene: PDXJ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gk0f_
  • Chain 'G':
    Compound: pyridoxine 5'-phosphate synthase
    Species: Burkholderia pseudomallei [TaxId:320372]
    Gene: PDXJ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gk0g_
  • Chain 'H':
    Compound: pyridoxine 5'-phosphate synthase
    Species: Burkholderia pseudomallei [TaxId:320372]
    Gene: PDXJ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gk0h_
  • Heterogens: PO4, DXP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3gk0A (A:)
mahhhhhhmgtleaqtqgpgsmsfflttpaaidlgvnidhvatlrnargtaypdpvraal
aaedagadaitlhlredrrhivdadvrtlrprvktrmnlecavtpemldiaceirphdac
lvpekrseltteggldvvghfdavraackqladagvrvslfidpdeaqiraahetgapvi
elhtgryadahdaaeqqreferiatgvdagialglkvnaghglhytnvqaiaalpgiael
nighaivahavfvgwdnavremkaimvaarvaalhggr

    Sequence, based on observed residues (ATOM records): (download) 
    >3gk0A (A:)
fflttpaaidlgvnidhvatlrnargtaypdpvraalaaedagadaitlhlredrrhivd
advrtlrprvktrmnlecavtpemldiaceirphdaclvpekrseltteggldvvghfda
vraackqladagvrvslfidpdeaqiraahetgapvielhtgryadahdaaeqqreferi
atgvdagialglkvnaghglhytnvqaiaalpgiaelnighaivahavfvgwdnavremk
aimvaarvaalh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3gk0B (B:)
mahhhhhhmgtleaqtqgpgsmsfflttpaaidlgvnidhvatlrnargtaypdpvraal
aaedagadaitlhlredrrhivdadvrtlrprvktrmnlecavtpemldiaceirphdac
lvpekrseltteggldvvghfdavraackqladagvrvslfidpdeaqiraahetgapvi
elhtgryadahdaaeqqreferiatgvdagialglkvnaghglhytnvqaiaalpgiael
nighaivahavfvgwdnavremkaimvaarvaalhggr

    Sequence, based on observed residues (ATOM records): (download) 
    >3gk0B (B:)
fflttpaaidlgvnidhvatlrnargtaypdpvraalaaedagadaitlhlredrrhivd
advrtlrprvktrmnlecavtpemldiaceirphdaclvpekrseltteggldvvghfda
vraackqladagvrvslfidpdeaqiraahetgapvielhtgryadahdaaeqqreferi
atgvdagialglkvnaghglhytnvqaiaalpgiaelnighaivahavfvgwdnavremk
aimvaarvaalh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3gk0C (C:)
mahhhhhhmgtleaqtqgpgsmsfflttpaaidlgvnidhvatlrnargtaypdpvraal
aaedagadaitlhlredrrhivdadvrtlrprvktrmnlecavtpemldiaceirphdac
lvpekrseltteggldvvghfdavraackqladagvrvslfidpdeaqiraahetgapvi
elhtgryadahdaaeqqreferiatgvdagialglkvnaghglhytnvqaiaalpgiael
nighaivahavfvgwdnavremkaimvaarvaalhggr

    Sequence, based on observed residues (ATOM records): (download) 
    >3gk0C (C:)
aidlgvnidhvatlrnargtaypdpvraalaaedagadaitlhlredrrhivdadvrtlr
prvktrmnlecavtpemldiaceirphdaclvpekrseltteggldvvghfdavraackq
ladagvrvslfidpdeaqiraahetgapvielhtgryadahdaaeqqreferiatgvdag
ialglkvnaghglhytnvqaiaalpgiaelnighaivahavfvgwdnavremkaimvaar
vaal

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3gk0D (D:)
mahhhhhhmgtleaqtqgpgsmsfflttpaaidlgvnidhvatlrnargtaypdpvraal
aaedagadaitlhlredrrhivdadvrtlrprvktrmnlecavtpemldiaceirphdac
lvpekrseltteggldvvghfdavraackqladagvrvslfidpdeaqiraahetgapvi
elhtgryadahdaaeqqreferiatgvdagialglkvnaghglhytnvqaiaalpgiael
nighaivahavfvgwdnavremkaimvaarvaalhggr

    Sequence, based on observed residues (ATOM records): (download) 
    >3gk0D (D:)
aaidlgvnidhvatlrnargtaypdpvraalaaedagadaitlhlredrrhivdadvrtl
rprvktrmnlecavtpemldiaceirphdaclvpekrseltteggldvvghfdavraack
qladagvrvslfidpdeaqiraahetgapvielhtgryadahdaaeqqreferiatgvda
gialglkvnaghglhytnvqaiaalpgiaelnighaivahavfvgwdnavremkaimvaa
rvaalh

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3gk0E (E:)
mahhhhhhmgtleaqtqgpgsmsfflttpaaidlgvnidhvatlrnargtaypdpvraal
aaedagadaitlhlredrrhivdadvrtlrprvktrmnlecavtpemldiaceirphdac
lvpekrseltteggldvvghfdavraackqladagvrvslfidpdeaqiraahetgapvi
elhtgryadahdaaeqqreferiatgvdagialglkvnaghglhytnvqaiaalpgiael
nighaivahavfvgwdnavremkaimvaarvaalhggr

    Sequence, based on observed residues (ATOM records): (download) 
    >3gk0E (E:)
aidlgvnidhvatlrnargtaypdpvraalaaedagadaitlhlredrrhivdadvrtlr
prvktrmnlecavtpemldiaceirphdaclvpekrseltteggldvvghfdavraackq
ladagvrvslfidpdeaqiraahetgapvielhtgryadahdaaeqqreferiatgvdag
ialglkvnaghglhytnvqaiaalpgiaelnighaivahavfvgwdnavremkaimvaar
vaalh

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3gk0F (F:)
mahhhhhhmgtleaqtqgpgsmsfflttpaaidlgvnidhvatlrnargtaypdpvraal
aaedagadaitlhlredrrhivdadvrtlrprvktrmnlecavtpemldiaceirphdac
lvpekrseltteggldvvghfdavraackqladagvrvslfidpdeaqiraahetgapvi
elhtgryadahdaaeqqreferiatgvdagialglkvnaghglhytnvqaiaalpgiael
nighaivahavfvgwdnavremkaimvaarvaalhggr

    Sequence, based on observed residues (ATOM records): (download) 
    >3gk0F (F:)
aidlgvnidhvatlrnargtaypdpvraalaaedagadaitlhlredrrhivdadvrtlr
prvktrmnlecavtpemldiaceirphdaclvpekrseltteggldvvghfdavraackq
ladagvrvslfidpdeaqiraahetgapvielhtgryadahdaaeqqreferiatgvdag
ialglkvnaghglhytnvqaiaalpgiaelnighaivahavfvgwdnavremkaimvaar
vaal

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3gk0G (G:)
mahhhhhhmgtleaqtqgpgsmsfflttpaaidlgvnidhvatlrnargtaypdpvraal
aaedagadaitlhlredrrhivdadvrtlrprvktrmnlecavtpemldiaceirphdac
lvpekrseltteggldvvghfdavraackqladagvrvslfidpdeaqiraahetgapvi
elhtgryadahdaaeqqreferiatgvdagialglkvnaghglhytnvqaiaalpgiael
nighaivahavfvgwdnavremkaimvaarvaalhggr

    Sequence, based on observed residues (ATOM records): (download) 
    >3gk0G (G:)
aidlgvnidhvatlrnargtaypdpvraalaaedagadaitlhlredrrhivdadvrtlr
prvktrmnlecavtpemldiaceirphdaclvpekrseltteggldvvghfdavraackq
ladagvrvslfidpdeaqiraahetgapvielhtgryadahdaaeqqreferiatgvdag
ialglkvnaghglhytnvqaiaalpgiaelnighaivahavfvgwdnavremkaimvaar
vaalh

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3gk0H (H:)
mahhhhhhmgtleaqtqgpgsmsfflttpaaidlgvnidhvatlrnargtaypdpvraal
aaedagadaitlhlredrrhivdadvrtlrprvktrmnlecavtpemldiaceirphdac
lvpekrseltteggldvvghfdavraackqladagvrvslfidpdeaqiraahetgapvi
elhtgryadahdaaeqqreferiatgvdagialglkvnaghglhytnvqaiaalpgiael
nighaivahavfvgwdnavremkaimvaarvaalhggr

    Sequence, based on observed residues (ATOM records): (download) 
    >3gk0H (H:)
aaidlgvnidhvatlrnargtaypdpvraalaaedagadaitlhlredrrhivdadvrtl
rprvktrmnlecavtpemldiaceirphdaclvpekrseltteggldvvghfdavraack
qladagvrvslfidpdeaqiraahetgapvielhtgryadahdaaeqqreferiatgvda
gialglkvnaghglhytnvqaiaalpgiaelnighaivahavfvgwdnavremkaimvaa
rvaalh