PDB entry 3ghb

View 3ghb on RCSB PDB site
Description: crystal structure of anti-hiv-1 fab 447-52d in complex with v3 peptide w2rw020
Deposited on 2009-03-03, released 2009-12-01
The last revision was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: Fab 447-52D, heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 3GHB (0-234)
  • Chain 'I':
    Compound: Fab 447-52D, heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 3GHB (0-234)
  • Chain 'L':
    Compound: Fab 447-52D, light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 3GHB (0-215)
  • Chain 'M':
    Compound: Fab 447-52D, light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 3GHB (0-215)
  • Chain 'P':
    Compound: Envelope glycoprotein
    Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: Envelope glycoprotein
    Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >3ghbH (H:)
evqlvesggglvkpggslrltcvasgftfsdvwlnwvrqapgkglewvgriksrtdggtt
dyaasvkgrftisrddskntlylqmnslktedtavyscttdgfimirgvsedyyyyymdv
wgkgttvtvssastkgpsvfplapcsrstsggtaalgclvkdyfpepvtvswnsgaltsg
vhtfpavlqssglyslssvvtvpssslgtqtytcnvnhkpsntkvdkrvelktpt

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >3ghbI (I:)
evqlvesggglvkpggslrltcvasgftfsdvwlnwvrqapgkglewvgriksrtdggtt
dyaasvkgrftisrddskntlylqmnslktedtavyscttdgfimirgvsedyyyyymdv
wgkgttvtvssastkgpsvfplapcsrstsggtaalgclvkdyfpepvtvswnsgaltsg
vhtfpavlqssglyslssvvtvpssslgtqtytcnvnhkpsntkvdkrvelktpt

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >3ghbL (L:)
qsvltqppsvsaapgqkvtiscsgsssnignnyvlwyqqfpgtapklliygnnkrpsgip
drfsgsksgtsatlgitglqtgdeadyfcatwdsglsadwvfgggtkltvlsqpkaapsv
tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
sylsltpeqwkshrsyscqvthegstvektvaptec

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >3ghbM (M:)
qsvltqppsvsaapgqkvtiscsgsssnignnyvlwyqqfpgtapklliygnnkrpsgip
drfsgsksgtsatlgitglqtgdeadyfcatwdsglsadwvfgggtkltvlsqpkaapsv
tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
sylsltpeqwkshrsyscqvthegstvektvaptec

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >3ghbP (P:)
kgvrigpgqa

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >3ghbQ (Q:)
kgvrigpgqa

    Sequence, based on observed residues (ATOM records):
    >3ghbQ (Q:)
kgvrigpgq