PDB entry 3gg2

View 3gg2 on RCSB PDB site
Description: crystal structure of udp-glucose 6-dehydrogenase from porphyromonas gingivalis bound to product udp-glucuronate
Deposited on 2009-02-27, released 2009-03-24
The last revision was dated 2021-10-20, with a file datestamp of 2021-10-15.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: PGN_1243, PG_1143
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7MVC7 (3-441)
      • expression tag (0-2)
      • engineered mutation (81)
      • engineered mutation (98)
      • engineered mutation (134)
      • engineered mutation (408)
      • expression tag (442-449)
  • Chain 'B':
    Compound: Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: PGN_1243, PG_1143
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7MVC7 (3-441)
      • expression tag (0-2)
      • engineered mutation (81)
      • engineered mutation (98)
      • engineered mutation (134)
      • engineered mutation (408)
      • expression tag (442-449)
  • Chain 'C':
    Compound: Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: PGN_1243, PG_1143
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7MVC7 (3-441)
      • expression tag (0-2)
      • engineered mutation (81)
      • engineered mutation (98)
      • engineered mutation (134)
      • engineered mutation (408)
      • expression tag (442-449)
  • Chain 'D':
    Compound: Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: PGN_1243, PG_1143
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7MVC7 (3-441)
      • expression tag (0-2)
      • engineered mutation (81)
      • engineered mutation (98)
      • engineered mutation (134)
      • engineered mutation (408)
      • expression tag (442-449)
  • Heterogens: UGA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3gg2A (A:)
msldiavvgigyvglvsatcfaelganvrcidtdrnkieqlnsgtipiyepglekmiarn
vkagrlrfgteieqavpeadiifiavgtpagedgsadmsyvldaarsigramsryilivt
kstvpvgsyrlirkaiqeeldkrevlidfdiasnpeflkegnaiddfmkpdrvvvgvdsd
rarelitslykpmllnnfrvlfmdiasaemtkyaanamlatrisfmndvanlcervgadv
smvrlgigsdsrigskflypgcgyggscfpkdvkalirtaedngyrmevleavervnekq
ksilfdkfstyykgnvqgrcvaiwglsfkpgtddmreapslvliekllevgcrvrvydpv
amkeaqkrlgdkveyttdmydavrgaealfhvtewkefrmpdwsalsqamaaslvidgrn
vyelpadsdftllnignsaieseghhhhhh

    Sequence, based on observed residues (ATOM records):
    >3gg2A (A:)
sldiavvgigyvglvsatcfaelganvrcidtdrnkieqlnsgtipiyepglekmiarnv
kagrlrfgteieqavpeadiifiavgtpagedgsadmsyvldaarsigramsryilivtk
stvpvgsyrlirkaiqeeldkrevlidfdiasnpeflkegnaiddfmkpdrvvvgvdsdr
arelitslykpmllnnfrvlfmdiasaemtkyaanamlatrisfmndvanlcervgadvs
mvrlgigsdsrigskflypgcgyggscfpkdvkalirtaedngyrmevleavervnekqk
silfdkfstyykgnvqgrcvaiwglsfkpgtddmreapslvliekllevgcrvrvydpva
mkeaqkrlgdkveyttdmydavrgaealfhvtewkefrmpdwsalsqamaaslvidgrnv
yelpftllnig

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3gg2B (B:)
msldiavvgigyvglvsatcfaelganvrcidtdrnkieqlnsgtipiyepglekmiarn
vkagrlrfgteieqavpeadiifiavgtpagedgsadmsyvldaarsigramsryilivt
kstvpvgsyrlirkaiqeeldkrevlidfdiasnpeflkegnaiddfmkpdrvvvgvdsd
rarelitslykpmllnnfrvlfmdiasaemtkyaanamlatrisfmndvanlcervgadv
smvrlgigsdsrigskflypgcgyggscfpkdvkalirtaedngyrmevleavervnekq
ksilfdkfstyykgnvqgrcvaiwglsfkpgtddmreapslvliekllevgcrvrvydpv
amkeaqkrlgdkveyttdmydavrgaealfhvtewkefrmpdwsalsqamaaslvidgrn
vyelpadsdftllnignsaieseghhhhhh

    Sequence, based on observed residues (ATOM records):
    >3gg2B (B:)
ldiavvgigyvglvsatcfaelganvrcidtdrnkieqlnsgtipiyepglekmiarnvk
agrlrfgteieqavpeadiifiavgtpagedgsadmsyvldaarsigramsryilivtks
tvpvgsyrlirkaiqeeldkrevlidfdiasnpeflkegnaiddfmkpdrvvvgvdsdra
relitslykpmlrvlfmdiasaemtkyaanamlatrisfmndvanlcervgadvsmvrlg
igsdsrigskflypgcgyggscfpkdvkalirtaedngyrmevleavervnekqksilfd
kfstyykgnvqgrcvaiwglsfkpgtddmreapslvliekllevgcrvrvydpvamkeaq
krlgdkveyttdmydavrgaealfhvtewkefrmpdwsalsqamaaslvidgrnvyelft
llnig

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3gg2C (C:)
msldiavvgigyvglvsatcfaelganvrcidtdrnkieqlnsgtipiyepglekmiarn
vkagrlrfgteieqavpeadiifiavgtpagedgsadmsyvldaarsigramsryilivt
kstvpvgsyrlirkaiqeeldkrevlidfdiasnpeflkegnaiddfmkpdrvvvgvdsd
rarelitslykpmllnnfrvlfmdiasaemtkyaanamlatrisfmndvanlcervgadv
smvrlgigsdsrigskflypgcgyggscfpkdvkalirtaedngyrmevleavervnekq
ksilfdkfstyykgnvqgrcvaiwglsfkpgtddmreapslvliekllevgcrvrvydpv
amkeaqkrlgdkveyttdmydavrgaealfhvtewkefrmpdwsalsqamaaslvidgrn
vyelpadsdftllnignsaieseghhhhhh

    Sequence, based on observed residues (ATOM records):
    >3gg2C (C:)
ldiavvgigyvglvsatcfaelganvrcidtdrnkieqlnsiyepglekmiarnvkagrl
rfgteieqavpeadiifiavgtpadgsadmsyvldaarsigramsryilivtkstvpvgs
yrlirkaiqeeldkrevlidfdiasnpeflkegnaiddfmkpdrvvvgvdsdrarelits
lykpmrvlfmdiasaemtkyaanamlatrisfmndvanlcervgadvsmvrlgigsdsri
gskflypgcgyggscfpkdvkalirtaedngyrmevleavervnekqksilfdkfstyyk
gnvqgrcvaiwglsfkpgtddmreapslvliekllevgcrvrvydpvamkeaqkrlgdkv
eyttdmydavrgaealfhvtewkefrmpdwsalsqamaaslvidgrnvyelpdftllnig

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3gg2D (D:)
msldiavvgigyvglvsatcfaelganvrcidtdrnkieqlnsgtipiyepglekmiarn
vkagrlrfgteieqavpeadiifiavgtpagedgsadmsyvldaarsigramsryilivt
kstvpvgsyrlirkaiqeeldkrevlidfdiasnpeflkegnaiddfmkpdrvvvgvdsd
rarelitslykpmllnnfrvlfmdiasaemtkyaanamlatrisfmndvanlcervgadv
smvrlgigsdsrigskflypgcgyggscfpkdvkalirtaedngyrmevleavervnekq
ksilfdkfstyykgnvqgrcvaiwglsfkpgtddmreapslvliekllevgcrvrvydpv
amkeaqkrlgdkveyttdmydavrgaealfhvtewkefrmpdwsalsqamaaslvidgrn
vyelpadsdftllnignsaieseghhhhhh

    Sequence, based on observed residues (ATOM records):
    >3gg2D (D:)
ldiavvgigyvglvsatcfaelganvrcidtdrnkieqlnsgtipiyepglekmiarnvk
agrlrfgteieqavpeadiifiavgtpgsadmsyvldaarsigramsryilivtkstvpv
gsyrlirkaiqeeldkrevlidfdiasnpeflkegnaiddfmkpdrvvvgvdsdrareli
tslykpmllnnfrvlfmdiasaemtkyaanamlatrisfmndvanlcervgadvsmvrlg
igsdsrigskflypgcgyggscfpkdvkalirtaedngyrmevleavervnekqksilfd
kfstyykgnvqgrcvaiwglsfkpgtddmreapslvliekllevgcrvrvydpvamkeaq
krlgdkveyttdmydavrgaealfhvtewkefrmpdwsalsqamaaslvidgrnvyelpd
ftllnig