PDB entry 3gfr
View 3gfr on RCSB PDB site
Description: Structure of YhdA, D137L variant
Class: oxidoreductase
Keywords: FLAVOPROTEINS, QUINONE REDUCTASE, FLAVODOXIN, OLIGOMERIZATION, Flavoprotein, FMN, NADP, Oxidoreductase
Deposited on
2009-02-27, released
2009-09-22
The last revision prior to the SCOPe 2.05 freeze date was dated
2009-09-22, with a file datestamp of
2009-09-18.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.202
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: FMN-dependent NADPH-azoreductase
Species: Bacillus subtilis [TaxId:1423]
Gene: azr, BSU09340, yhdA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3gfra_ - Chain 'B':
Compound: FMN-dependent NADPH-azoreductase
Species: Bacillus subtilis [TaxId:1423]
Gene: azr, BSU09340, yhdA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3gfrb_ - Chain 'C':
Compound: FMN-dependent NADPH-azoreductase
Species: Bacillus subtilis [TaxId:1423]
Gene: azr, BSU09340, yhdA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3gfrc_ - Chain 'D':
Compound: FMN-dependent NADPH-azoreductase
Species: Bacillus subtilis [TaxId:1423]
Gene: azr, BSU09340, yhdA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3gfrd_ - Heterogens: FMN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3gfrA (A:)
mnmlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqr
vtkadaivllspeyhsgmsgalknaldflsseqfkykpvallavagggkgginalnnmrt
vmrgvyanvipkqlvllpvhidvenatvaenikesikelveelsmfakagnpgv
Sequence, based on observed residues (ATOM records): (download)
>3gfrA (A:)
mlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqrvt
kadaivllspeyhsgmsgalknaldflsseqfkykpvallavagggkgginalnnmrtvm
rgvyanvipkqlvllpvhidvenatvaenikesikelveelsmfaka
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3gfrB (B:)
mnmlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqr
vtkadaivllspeyhsgmsgalknaldflsseqfkykpvallavagggkgginalnnmrt
vmrgvyanvipkqlvllpvhidvenatvaenikesikelveelsmfakagnpgv
Sequence, based on observed residues (ATOM records): (download)
>3gfrB (B:)
mlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqrvt
kadaivllspeyhsgmsgalknaldflsseqfkykpvallavagggkgginalnnmrtvm
rgvyanvipkqlvllpvhidvenatvaenikesikelveelsmfaka
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3gfrC (C:)
mnmlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqr
vtkadaivllspeyhsgmsgalknaldflsseqfkykpvallavagggkgginalnnmrt
vmrgvyanvipkqlvllpvhidvenatvaenikesikelveelsmfakagnpgv
Sequence, based on observed residues (ATOM records): (download)
>3gfrC (C:)
mlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqrvt
kadaivllspeyhsgmsgalknaldflsseqfkykpvallavagggkgginalnnmrtvm
rgvyanvipkqlvllpvhidvenatvaenikesikelveelsmfaka
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3gfrD (D:)
mnmlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqr
vtkadaivllspeyhsgmsgalknaldflsseqfkykpvallavagggkgginalnnmrt
vmrgvyanvipkqlvllpvhidvenatvaenikesikelveelsmfakagnpgv
Sequence, based on observed residues (ATOM records): (download)
>3gfrD (D:)
mlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqrvt
kadaivllspeyhsgmsgalknaldflsseqfkykpvallavagggkgginalnnmrtvm
rgvyanvipkqlvllpvhidvenatvaenikesikelveelsmfakagnpgv