PDB entry 3gfq

View 3gfq on RCSB PDB site
Description: Structure of YhdA, K109L variant
Class: oxidoreductase
Keywords: FLAVOPROTEINS, QUINONE REDUCTASE, FLAVODOXIN, OLIGOMERIZATION, Flavoprotein, FMN, NADP, Oxidoreductase
Deposited on 2009-02-27, released 2009-09-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-09-22, with a file datestamp of 2009-09-18.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.225
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: FMN-dependent NADPH-azoreductase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: azr, BSU09340, yhdA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O07529
      • engineered (108)
    Domains in SCOPe 2.08: d3gfqa_
  • Chain 'B':
    Compound: FMN-dependent NADPH-azoreductase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: azr, BSU09340, yhdA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O07529
      • engineered (108)
    Domains in SCOPe 2.08: d3gfqb_
  • Chain 'C':
    Compound: FMN-dependent NADPH-azoreductase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: azr, BSU09340, yhdA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O07529
      • engineered (108)
    Domains in SCOPe 2.08: d3gfqc_
  • Chain 'D':
    Compound: FMN-dependent NADPH-azoreductase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: azr, BSU09340, yhdA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O07529
      • engineered (108)
    Domains in SCOPe 2.08: d3gfqd_
  • Heterogens: FMN

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3gfqA (A:)
mnmlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqr
vtkadaivllspeyhsgmsgalknaldflsseqfkykpvallavaggglgginalnnmrt
vmrgvyanvipkqlvldpvhidvenatvaenikesikelveelsmfakagnpgv

    Sequence, based on observed residues (ATOM records): (download) 
    >3gfqA (A:)
mlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqrvt
kadaivllspeyhsgmsgalknaldflsseqfkykpvallavaggglgginalnnmrtvm
rgvyanvipkqlvldpvhidvenatvaenikesikelveelsmfakag

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3gfqB (B:)
mnmlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqr
vtkadaivllspeyhsgmsgalknaldflsseqfkykpvallavaggglgginalnnmrt
vmrgvyanvipkqlvldpvhidvenatvaenikesikelveelsmfakagnpgv

    Sequence, based on observed residues (ATOM records): (download) 
    >3gfqB (B:)
mlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqrvt
kadaivllspeyhsgmsgalknaldflsseqfkykpvallavaggglgginalnnmrtvm
rgvyanvipkqlvldpvhidvenatvaenikesikelveelsmfaka

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3gfqC (C:)
mnmlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqr
vtkadaivllspeyhsgmsgalknaldflsseqfkykpvallavaggglgginalnnmrt
vmrgvyanvipkqlvldpvhidvenatvaenikesikelveelsmfakagnpgv

    Sequence, based on observed residues (ATOM records): (download) 
    >3gfqC (C:)
mlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqrvt
kadaivllspeyhsgmsgalknaldflsseqfkykpvallavaggglgginalnnmrtvm
rgvyanvipkqlvldpvhidvenatvaenikesikelveelsmfaka

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3gfqD (D:)
mnmlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqr
vtkadaivllspeyhsgmsgalknaldflsseqfkykpvallavaggglgginalnnmrt
vmrgvyanvipkqlvldpvhidvenatvaenikesikelveelsmfakagnpgv

    Sequence, based on observed residues (ATOM records): (download) 
    >3gfqD (D:)
mlvingtprkhgrtriaasyiaalyhtdlidlsefvlpvfngeaeqsellkvqelkqrvt
kadaivllspeyhsgmsgalknaldflsseqfkykpvallavaggglgginalnnmrtvm
rgvyanvipkqlvldpvhidvenatvaenikesikelveelsmfaka