PDB entry 3gdz

View 3gdz on RCSB PDB site
Description: Crystal structure of arginyl-tRNA synthetase from Klebsiella pneumoniae subsp. pneumoniae
Deposited on 2009-02-24, released 2009-03-10
The last revision was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.195
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: arginyl-tRNA synthetase
    Species: Klebsiella pneumoniae subsp. pneumoniae [TaxId:272620]
    Gene: argS, KPN78578_23530, KPN_02388
    Database cross-references and differences (RAF-indexed):
    • Uniprot A6TB43 (3-End)
      • expression tag (0-2)
  • Chain 'B':
    Compound: arginyl-tRNA synthetase
    Species: Klebsiella pneumoniae subsp. pneumoniae [TaxId:272620]
    Gene: argS, KPN78578_23530, KPN_02388
    Database cross-references and differences (RAF-indexed):
    • Uniprot A6TB43 (3-End)
      • expression tag (1-2)
  • Chain 'C':
    Compound: arginyl-tRNA synthetase
    Species: Klebsiella pneumoniae subsp. pneumoniae [TaxId:272620]
    Gene: argS, KPN78578_23530, KPN_02388
    Database cross-references and differences (RAF-indexed):
    • Uniprot A6TB43 (3-End)
      • expression tag (1-2)
  • Chain 'D':
    Compound: arginyl-tRNA synthetase
    Species: Klebsiella pneumoniae subsp. pneumoniae [TaxId:272620]
    Gene: argS, KPN78578_23530, KPN_02388
    Database cross-references and differences (RAF-indexed):
    • Uniprot A6TB43 (3-End)
      • expression tag (1-2)
  • Heterogens: EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3gdzA (A:)
snamniqallsekvsqaliaagapadcepqvrqsakvqfgdyqangvmavakklgmaprq
laeqvlshldlngiankveiagpgfinifldpafladnvnralqserlg

    Sequence, based on observed residues (ATOM records):
    >3gdzA (A:)
snamniqallsekvsqaliaagapadcepqvrqsakvqfgdyqangvmavakklgmaprq
laeqvlshldlngiankveiagpgfinifldpafladnvnralqse

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3gdzB (B:)
snamniqallsekvsqaliaagapadcepqvrqsakvqfgdyqangvmavakklgmaprq
laeqvlshldlngiankveiagpgfinifldpafladnvnralqserlg

    Sequence, based on observed residues (ATOM records):
    >3gdzB (B:)
namniqallsekvsqaliaagapadcepqvrqsakvqfgdyqangvmavakklgmaprql
aeqvlshldlngiankveiagpgfinifldpafladnvnralqserl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3gdzC (C:)
snamniqallsekvsqaliaagapadcepqvrqsakvqfgdyqangvmavakklgmaprq
laeqvlshldlngiankveiagpgfinifldpafladnvnralqserlg

    Sequence, based on observed residues (ATOM records):
    >3gdzC (C:)
namniqallsekvsqaliaagapadcepqvrqsakvqfgdyqangvmavakklgmaprql
aeqvlshldlngiankveiagpgfinifldpafladnvnralqser

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3gdzD (D:)
snamniqallsekvsqaliaagapadcepqvrqsakvqfgdyqangvmavakklgmaprq
laeqvlshldlngiankveiagpgfinifldpafladnvnralqserlg

    Sequence, based on observed residues (ATOM records):
    >3gdzD (D:)
namniqallsekvsqaliaagapadcepqvrqsakvqfgdyqangvmavakklgmaprql
aeqvlshldlngiankveiagpgfinifldpafladnvnralqs