PDB entry 3gdi

View 3gdi on RCSB PDB site
Description: mammalian clock protein mper2 - crystal structure of a pas domain fragment
Deposited on 2009-02-24, released 2009-05-19
The last revision was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Period circadian protein homolog 2
    Species: Mus musculus [TaxId:10090]
    Gene: Per2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O54943 (5-308)
      • expression tag (3-4)
  • Chain 'B':
    Compound: Period circadian protein homolog 2
    Species: Mus musculus [TaxId:10090]
    Gene: Per2
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3gdiA (A:)
gplgssysmeqvegitseyivknadmfavavslvsgkilyisnqvasifhckkdafsdak
fveflaphdvsvfhsyttpyklppwsvcsgldsftqecmeeksffcrvsvgkhheneiry
qpfrmtpylvkvqeqqgaesqlcclllaervhsgyeaprippekrifttthtpnclfqav
deravpllgylpqdlietpvlvqlhpsdrplmlaihkkilqaggqpfdyspirfrtrnge
yitldtswssfinpwsrkisfiigrhkvrvgplnedvfaappcpeektphpsvqelteqi
hrllmqpvp

    Sequence, based on observed residues (ATOM records):
    >3gdiA (A:)
gssysmeqvegitsenadmfavavslvsgkilyisnqvasifsdakfveflaphdvsvfh
syttpyklppwseksffcrvsvgkeiryqpfrmtpylvkvqlcclllaervhsgyeapri
ppekrifttthtpnclfqavderavpllgylpqdlietpvlvqlhpsdrplmlaihkkil
qaggqpfdyspirfrtrngeyitldtswssfinpwsrkisfiigrhkvrvgplnedvfaa
ppcpeektphpsvqelteqihrllmqpvp

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3gdiB (B:)
gplgssysmeqvegitseyivknadmfavavslvsgkilyisnqvasifhckkdafsdak
fveflaphdvsvfhsyttpyklppwsvcsgldsftqecmeeksffcrvsvgkhheneiry
qpfrmtpylvkvqeqqgaesqlcclllaervhsgyeaprippekrifttthtpnclfqav
deravpllgylpqdlietpvlvqlhpsdrplmlaihkkilqaggqpfdyspirfrtrnge
yitldtswssfinpwsrkisfiigrhkvrvgplnedvfaappcpeektphpsvqelteqi
hrllmqpvp

    Sequence, based on observed residues (ATOM records):
    >3gdiB (B:)
itseyivadmfavavslvsgkilyisnqvasidakfveflaphdvsvfhsyttpyklpme
eksffcrvsvgryqpfrmtpylvkesqlcclllaervhsgyeaprippekrifttthtpn
clfqavderavpllgylpqdlietpvlvqlhpsdrplmlaihkkilqaggqpfdyspirf
rtrngeyitldtswssfinpwsrkisfiigrhkvrvgplnedvfaappcpepsvqelteq
ihrllmqpvp