PDB entry 3gd5

View 3gd5 on RCSB PDB site
Description: Crystal structure of ornithine carbamoyltransferase from Gloeobacter violaceus
Class: transferase
Keywords: Structural Genomics, NYSGXRC, target 9454p, ornithine carbamoyltransferase, operon, Amino-acid biosynthesis, Arginine biosynthesis, Transferase, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics
Deposited on 2009-02-23, released 2009-04-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ornithine carbamoyltransferase
    Species: Gloeobacter violaceus [TaxId:251221]
    Gene: argF, gll3101
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gd5a1, d3gd5a2
  • Chain 'B':
    Compound: ornithine carbamoyltransferase
    Species: Gloeobacter violaceus [TaxId:251221]
    Gene: argF, gll3101
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gd5b1, d3gd5b2
  • Chain 'C':
    Compound: ornithine carbamoyltransferase
    Species: Gloeobacter violaceus [TaxId:251221]
    Gene: argF, gll3101
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gd5c1, d3gd5c2
  • Chain 'D':
    Compound: ornithine carbamoyltransferase
    Species: Gloeobacter violaceus [TaxId:251221]
    Gene: argF, gll3101
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gd5d1, d3gd5d2
  • Chain 'E':
    Compound: ornithine carbamoyltransferase
    Species: Gloeobacter violaceus [TaxId:251221]
    Gene: argF, gll3101
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gd5e1, d3gd5e2
  • Chain 'F':
    Compound: ornithine carbamoyltransferase
    Species: Gloeobacter violaceus [TaxId:251221]
    Gene: argF, gll3101
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gd5f1, d3gd5f2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3gd5A (A:)
mslsaslgatrfrpdllslddldeaqlhalltlahqlkrgervanlhgkvlglvflkast
rtrvsftvamyqlggqvidlspsntqvgrgepvrdtarvlgryvdglairtfaqteleey
ahyagipvinaltdhehpcqvvadlltirenfgrlaglklayvgdgnnvahslllgcakv
gmsiavatpegftpdpavsaraseiagrtgaevqilrdpfeaargahilytdvwtsmgqe
aetqhrlqlfeqyqinaallncaaaeaivlhclpahrgeeitdevmegprsriwdeaenr
lhaqkavlaalmggreghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3gd5A (A:)
trfrpdllslddldeaqlhalltlahqlkrgervanlhgkvlglvflkastrtrvsftva
myqlggqvidlepvrdtarvlgryvdglairtfaqteleeyahyagipvinaltdhehpc
qvvadlltirenfgrlaglklayvgdgnnvahslllgcakvgmsiavatpegftpdpavs
araseiagrtgaevqilrdpfeaargahilytdvwthrlqlfeqyqinaallncaaaeai
vlhclpahrgeeitdevmegprsriwdeaenrlhaqkavlaalmg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3gd5B (B:)
mslsaslgatrfrpdllslddldeaqlhalltlahqlkrgervanlhgkvlglvflkast
rtrvsftvamyqlggqvidlspsntqvgrgepvrdtarvlgryvdglairtfaqteleey
ahyagipvinaltdhehpcqvvadlltirenfgrlaglklayvgdgnnvahslllgcakv
gmsiavatpegftpdpavsaraseiagrtgaevqilrdpfeaargahilytdvwtsmgqe
aetqhrlqlfeqyqinaallncaaaeaivlhclpahrgeeitdevmegprsriwdeaenr
lhaqkavlaalmggreghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3gd5B (B:)
trfrpdllslddldeaqlhalltlahqlkrgervanlhgkvlglvflkastrtrvsftva
myqlggqvidlepvrdtarvlgryvdglairtfaqteleeyahyagipvinaltdhehpc
qvvadlltirenfgrlaglklayvgdgnnvahslllgcakvgmsiavatpegftpdpavs
araseiagrtgaevqilrdpfeaargahilytdvwthrlqlfeqyqinaallncaaaeai
vlhclpahrgeeitdevmegprsriwdeaenrlhaqkavlaalmg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3gd5C (C:)
mslsaslgatrfrpdllslddldeaqlhalltlahqlkrgervanlhgkvlglvflkast
rtrvsftvamyqlggqvidlspsntqvgrgepvrdtarvlgryvdglairtfaqteleey
ahyagipvinaltdhehpcqvvadlltirenfgrlaglklayvgdgnnvahslllgcakv
gmsiavatpegftpdpavsaraseiagrtgaevqilrdpfeaargahilytdvwtsmgqe
aetqhrlqlfeqyqinaallncaaaeaivlhclpahrgeeitdevmegprsriwdeaenr
lhaqkavlaalmggreghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3gd5C (C:)
trfrpdllslddldeaqlhalltlahqlkrgervanlhgkvlglvflkastrtrvsftva
myqlggqvidlepvrdtarvlgryvdglairtfaqteleeyahyagipvinaltdhehpc
qvvadlltirenfgrlaglklayvgdgnnvahslllgcakvgmsiavatpegftpdpavs
araseiagrtgaevqilrdpfeaargahilytdvwthrlqlfeqyqinaallncaaaeai
vlhclpahrgeeitdevmegprsriwdeaenrlhaqkavlaalmg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3gd5D (D:)
mslsaslgatrfrpdllslddldeaqlhalltlahqlkrgervanlhgkvlglvflkast
rtrvsftvamyqlggqvidlspsntqvgrgepvrdtarvlgryvdglairtfaqteleey
ahyagipvinaltdhehpcqvvadlltirenfgrlaglklayvgdgnnvahslllgcakv
gmsiavatpegftpdpavsaraseiagrtgaevqilrdpfeaargahilytdvwtsmgqe
aetqhrlqlfeqyqinaallncaaaeaivlhclpahrgeeitdevmegprsriwdeaenr
lhaqkavlaalmggreghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3gd5D (D:)
trfrpdllslddldeaqlhalltlahqlkrgervanlhgkvlglvflkastrtrvsftva
myqlggqvidlepvrdtarvlgryvdglairtfaqteleeyahyagipvinaltdhehpc
qvvadlltirenfgrlaglklayvgdgnnvahslllgcakvgmsiavatpegftpdpavs
araseiagrtgaevqilrdpfeaargahilytdvwthrlqlfeqyqinaallncaaaeai
vlhclpahrgeeitdevmegprsriwdeaenrlhaqkavlaalmg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3gd5E (E:)
mslsaslgatrfrpdllslddldeaqlhalltlahqlkrgervanlhgkvlglvflkast
rtrvsftvamyqlggqvidlspsntqvgrgepvrdtarvlgryvdglairtfaqteleey
ahyagipvinaltdhehpcqvvadlltirenfgrlaglklayvgdgnnvahslllgcakv
gmsiavatpegftpdpavsaraseiagrtgaevqilrdpfeaargahilytdvwtsmgqe
aetqhrlqlfeqyqinaallncaaaeaivlhclpahrgeeitdevmegprsriwdeaenr
lhaqkavlaalmggreghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3gd5E (E:)
trfrpdllslddldeaqlhalltlahqlkrgervanlhgkvlglvflkastrtrvsftva
myqlggqvidlepvrdtarvlgryvdglairtfaqteleeyahyagipvinaltdhehpc
qvvadlltirenfgrlaglklayvgdgnnvahslllgcakvgmsiavatpegftpdpavs
araseiagrtgaevqilrdpfeaargahilytdvwthrlqlfeqyqinaallncaaaeai
vlhclpahrgeeitdevmegprsriwdeaenrlhaqkavlaalmg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3gd5F (F:)
mslsaslgatrfrpdllslddldeaqlhalltlahqlkrgervanlhgkvlglvflkast
rtrvsftvamyqlggqvidlspsntqvgrgepvrdtarvlgryvdglairtfaqteleey
ahyagipvinaltdhehpcqvvadlltirenfgrlaglklayvgdgnnvahslllgcakv
gmsiavatpegftpdpavsaraseiagrtgaevqilrdpfeaargahilytdvwtsmgqe
aetqhrlqlfeqyqinaallncaaaeaivlhclpahrgeeitdevmegprsriwdeaenr
lhaqkavlaalmggreghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3gd5F (F:)
trfrpdllslddldeaqlhalltlahqlkrgervanlhgkvlglvflkastrtrvsftva
myqlggqvidlepvrdtarvlgryvdglairtfaqteleeyahyagipvinaltdhehpc
qvvadlltirenfgrlaglklayvgdgnnvahslllgcakvgmsiavatpegftpdpavs
araseiagrtgaevqilrdpfeaargahilytdvwthrlqlfeqyqinaallncaaaeai
vlhclpahrgeeitdevmegprsriwdeaenrlhaqkavlaalmg