PDB entry 3gcm

View 3gcm on RCSB PDB site
Description: Crystal Structure of E. coli polynucleotide phosphorylase bound to RNA and RNase E
Deposited on 2009-02-22, released 2009-06-09
The last revision was dated 2009-06-09, with a file datestamp of 2009-06-05.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.169
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polyribonucleotide nucleotidyltransferase
    Species: Escherichia coli E24377A [TaxId:331111]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Polyribonucleotide nucleotidyltransferase
    Species: Escherichia coli E24377A [TaxId:331111]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Polyribonucleotide nucleotidyltransferase
    Species: Escherichia coli E24377A [TaxId:331111]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Ribonuclease E
    Species: synthetic, synthetic [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Ribonuclease E
    Species: synthetic, synthetic [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Ribonuclease E
    Species: synthetic, synthetic [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FLC, MG, 5GP, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3gcmA (A:)
mlnpivrkfqygqhtvtletgmmarqataavmvsmddtavfvtvvgqkkakpgqdffplt
vnyqertyaagripgsffrregrpsegetliarlidrpirplfpegfvnevqviatvvsv
npqvnpdivamigasaalslsgipfngpigaarvgyindqyvlnptqdelkeskldlvva
gteaavlmveseaellsedqmlgavvfgheqqqvviqninelvkeagkprwdwqpepvne
alnarvaalaearlsdayritdkqeryaqvdviksetiatllaedetldenelgeilhai
eknvvrsrvlagepridgrekdmirgldvrtgvlprthgsalftrgetqalvtatlgtar
daqvldelmgertdtflfhynfppysvgetgmvgspkrreighgrlakrgvlavmpdmdk
fpytvrvvseitesngsssmasvcgaslalmdagvpikaavagiamglvkegdnyvvlsd
ilgdedhlgdmdfkvagsrdgisalqmdikiegitkeimqvalnqakgarlhilgvmeqa
inaprgdis

    Sequence, based on observed residues (ATOM records):
    >3gcmA (A:)
lnpivrkfqygqhtvtletgmmarqataavmvsmddtavfvtvvgqkkakpgqdffpltv
nyqertyaagripgsffrregrpsegetliarlidrpirplfpegfvnevqviatvvsvn
pqvnpdivamigasaalslsgipfngpigaarvgyindqyvlnptqdelkeskldlvvag
teaavlmveseaellsedqmlgavvfgheqqqvviqninelvkeagkprwdwqpepvnea
lnarvaalaearlsdayritdkqeryaqvdviksetiatllaedetldenelgeilhaie
knvvrsrvlagepridgrekdmirgldvrtgvlprthgsalftrgetqalvtatlgtard
aqvldelmgertdtflfhynfppysvgetgmvgspkrreighgrlakrgvlavmpdmdkf
pytvrvvseitesngsssmasvcgaslalmdagvpikaavagiamglvkegdnyvvlsdi
lgdedhlgdmdfkvagsrdgisalqmdikiegitkeimqvalnqakgarlhilgvmeqai
napr

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3gcmB (B:)
mlnpivrkfqygqhtvtletgmmarqataavmvsmddtavfvtvvgqkkakpgqdffplt
vnyqertyaagripgsffrregrpsegetliarlidrpirplfpegfvnevqviatvvsv
npqvnpdivamigasaalslsgipfngpigaarvgyindqyvlnptqdelkeskldlvva
gteaavlmveseaellsedqmlgavvfgheqqqvviqninelvkeagkprwdwqpepvne
alnarvaalaearlsdayritdkqeryaqvdviksetiatllaedetldenelgeilhai
eknvvrsrvlagepridgrekdmirgldvrtgvlprthgsalftrgetqalvtatlgtar
daqvldelmgertdtflfhynfppysvgetgmvgspkrreighgrlakrgvlavmpdmdk
fpytvrvvseitesngsssmasvcgaslalmdagvpikaavagiamglvkegdnyvvlsd
ilgdedhlgdmdfkvagsrdgisalqmdikiegitkeimqvalnqakgarlhilgvmeqa
inaprgdis

    Sequence, based on observed residues (ATOM records):
    >3gcmB (B:)
mlnpivrkfqygqhtvtletgmmarqataavmvsmddtavfvtvvgqkkakpgqdffplt
vnyqertyaagripgsffrregrpsegetliarlidrpirplfpegfvnevqviatvvsv
npqvnpdivamigasaalslsgipfngpigaarvgyindqyvlnptqdelkeskldlvva
gteaavlmveseaellsedqmlgavvfgheqqqvviqninelvkeagkprwdwqpepvne
alnarvaalaearlsdayritdkqeryaqvdviksetiatllaedetldenelgeilhai
eknvvrsrvlagepridgrekdmirgldvrtgvlprthgsalftrgetqalvtatlgtar
daqvldelmgertdtflfhynfppysvgetgmvgspkrreighgrlakrgvlavmpdmdk
fpytvrvvseitesngsssmasvcgaslalmdagvpikaavagiamglvkegdnyvvlsd
ilgdedhlgdmdfkvagsrdgisalqmdikiegitkeimqvalnqakgarlhilgvmeqa
inap

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3gcmC (C:)
mlnpivrkfqygqhtvtletgmmarqataavmvsmddtavfvtvvgqkkakpgqdffplt
vnyqertyaagripgsffrregrpsegetliarlidrpirplfpegfvnevqviatvvsv
npqvnpdivamigasaalslsgipfngpigaarvgyindqyvlnptqdelkeskldlvva
gteaavlmveseaellsedqmlgavvfgheqqqvviqninelvkeagkprwdwqpepvne
alnarvaalaearlsdayritdkqeryaqvdviksetiatllaedetldenelgeilhai
eknvvrsrvlagepridgrekdmirgldvrtgvlprthgsalftrgetqalvtatlgtar
daqvldelmgertdtflfhynfppysvgetgmvgspkrreighgrlakrgvlavmpdmdk
fpytvrvvseitesngsssmasvcgaslalmdagvpikaavagiamglvkegdnyvvlsd
ilgdedhlgdmdfkvagsrdgisalqmdikiegitkeimqvalnqakgarlhilgvmeqa
inaprgdis

    Sequence, based on observed residues (ATOM records):
    >3gcmC (C:)
mlnpivrkfqygqhtvtletgmmarqataavmvsmddtavfvtvvgqkkakpgqdffplt
vnyqertyaagripgsffrregrpsegetliarlidrpirplfpegfvnevqviatvvsv
npqvnpdivamigasaalslsgipfngpigaarvgyindqyvlnptqdelkeskldlvva
gteaavlmveseaellsedqmlgavvfgheqqqvviqninelvkeagkprwdwqpepvne
alnarvaalaearlsdayritdkqeryaqvdviksetiatllaedetldenelgeilhai
eknvvrsrvlagepridgrekdmirgldvrtgvlprthgsalftrgetqalvtatlgtar
daqvldelmgertdtflfhynfppysvgetgmvgspkrreighgrlakrgvlavmpdmdk
fpytvrvvseitesngsssmasvcgaslalmdagvpikaavagiamglvkegdnyvvlsd
ilgdedhlgdmdfkvagsrdgisalqmdikiegitkeimqvalnqakgarlhilgvmeqa
inap

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3gcmD (D:)
eaprhsdwqrptfafegkgaagghtathhasaaparpqpve

    Sequence, based on observed residues (ATOM records):
    >3gcmD (D:)
gaagghtathhasaaparpqp

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3gcmE (E:)
eaprhsdwqrptfafegkgaagghtathhasaaparpqpve

    Sequence, based on observed residues (ATOM records):
    >3gcmE (E:)
aagghtathhasaaparpqp

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3gcmF (F:)
eaprhsdwqrptfafegkgaagghtathhasaaparpqpve

    Sequence, based on observed residues (ATOM records):
    >3gcmF (F:)
gaagghtathhasaaparpqp