PDB entry 3gcd

View 3gcd on RCSB PDB site
Description: structure of the v. cholerae rtx cysteine protease domain in complex with an aza-leucine peptide inhibitor
Deposited on 2009-02-21, released 2009-05-26
The last revision was dated 2020-10-14, with a file datestamp of 2020-10-09.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RTX toxin RtxA
    Species: Vibrio cholerae [TaxId:666]
    Gene: rtxA, vc1451, VC_1451
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: RTX toxin RtxA
    Species: Vibrio cholerae [TaxId:666]
    Gene: rtxA, vc1451, VC_1451
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: RTX toxin RtxA
    Species: Vibrio cholerae [TaxId:666]
    Gene: rtxA, vc1451, VC_1451
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: RTX toxin RtxA
    Species: Vibrio cholerae [TaxId:666]
    Gene: rtxA, vc1451, VC_1451
    Database cross-references and differences (RAF-indexed):
  • Heterogens: AZ0, IHP, NA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3gcdA (A:)
adgkilhnqnvnswgpitvtpttdggetrfdgqiivqmendpvvakaaanlagkhaessv
vvqldsdgnyrvvygdpskldgklrwqlvghgrdhsetnntrlsgysadelavklakfqq
sfnqaeninnkpdhisivgcslvsddkqkgfghqfinamdanglrvdvsvrsselavdea
grkhtkdangdwvqkaennkvslswdaqg

    Sequence, based on observed residues (ATOM records):
    >3gcdA (A:)
kilhnqnvnswgpitvtpttdggetrfdgqiivqmendpvvakaaanlagkhaessvvvq
ldsdgnyrvvygdpskldgklrwqlvghgrdhsetnntrlsgysadelavklakfqqsfn
qaeninnkpdhisivgcslvsddkqkgfghqfinamdanglrvdvsvrsselavdeagrk
htkdangdwvqkaennkvslsw

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3gcdB (B:)
adgkilhnqnvnswgpitvtpttdggetrfdgqiivqmendpvvakaaanlagkhaessv
vvqldsdgnyrvvygdpskldgklrwqlvghgrdhsetnntrlsgysadelavklakfqq
sfnqaeninnkpdhisivgcslvsddkqkgfghqfinamdanglrvdvsvrsselavdea
grkhtkdangdwvqkaennkvslswdaqg

    Sequence, based on observed residues (ATOM records):
    >3gcdB (B:)
kilhnqnvnswgpitvtpttdggetrfdgqiivqmendpvvakaaanlagkhaessvvvq
ldsdgnyrvvygdpskldgklrwqlvghgrdhsetnntrlsgysadelavklakfqqsfn
qaeninnkpdhisivgcslvsddkqkgfghqfinamdanglrvdvsvrsselavdeagrk
htkdangdwvqkaennkvslsw

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3gcdC (C:)
adgkilhnqnvnswgpitvtpttdggetrfdgqiivqmendpvvakaaanlagkhaessv
vvqldsdgnyrvvygdpskldgklrwqlvghgrdhsetnntrlsgysadelavklakfqq
sfnqaeninnkpdhisivgcslvsddkqkgfghqfinamdanglrvdvsvrsselavdea
grkhtkdangdwvqkaennkvslswdaqg

    Sequence, based on observed residues (ATOM records):
    >3gcdC (C:)
kilhnqnvnswgpitvtpttdggetrfdgqiivqmendpvvakaaanlagkhaessvvvq
ldsdgnyrvvygdpskldgklrwqlvghgrdhsetnntrlsgysadelavklakfqqsfn
qaeninnkpdhisivgcslvsddkqkgfghqfinamdanglrvdvsvrsselavdeagrk
htkdangdwvqkaennkvslsw

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3gcdD (D:)
adgkilhnqnvnswgpitvtpttdggetrfdgqiivqmendpvvakaaanlagkhaessv
vvqldsdgnyrvvygdpskldgklrwqlvghgrdhsetnntrlsgysadelavklakfqq
sfnqaeninnkpdhisivgcslvsddkqkgfghqfinamdanglrvdvsvrsselavdea
grkhtkdangdwvqkaennkvslswdaqg

    Sequence, based on observed residues (ATOM records):
    >3gcdD (D:)
kilhnqnvnswgpitvtpttdggetrfdgqiivqmendpvvakaaanlagkhaessvvvq
ldsdgnyrvvygdpskldgklrwqlvghgrdhsetnntrlsgysadelavklakfqqsfn
qaeninnkpdhisivgcslvsddkqkgfghqfinamdanglrvdvsvrsselavdeagrk
htkdangdwvqkaennkvslsw