PDB entry 3gbu

View 3gbu on RCSB PDB site
Description: Crystal structure of an uncharacterized sugar kinase PH1459 from Pyrococcus horikoshii in complex with ATP
Class: transferase
Keywords: CARBOHYDRATE KINASE, PFKB FAMILY, PSI-II, 11207g, NYSGXRC, Structural Genomics, Protein Structure Initiative, New York Structural GenomiX Research Consortium, Kinase, Transferase, New York SGX Research Center for Structural Genomics
Deposited on 2009-02-20, released 2009-03-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uncharacterized sugar kinase PH1459
    Species: Pyrococcus horikoshii [TaxId:70601]
    Gene: PH1459, PHCC008
    Database cross-references and differences (RAF-indexed):
    • Uniprot O59128 (3-End)
      • expression tag (2)
      • engineered (220)
    Domains in SCOPe 2.08: d3gbua1, d3gbua2
  • Chain 'B':
    Compound: Uncharacterized sugar kinase PH1459
    Species: Pyrococcus horikoshii [TaxId:70601]
    Gene: PH1459, PHCC008
    Database cross-references and differences (RAF-indexed):
    • Uniprot O59128 (3-End)
      • expression tag (2)
      • engineered (220)
    Domains in SCOPe 2.08: d3gbub1, d3gbub2
  • Chain 'C':
    Compound: Uncharacterized sugar kinase PH1459
    Species: Pyrococcus horikoshii [TaxId:70601]
    Gene: PH1459, PHCC008
    Database cross-references and differences (RAF-indexed):
    • Uniprot O59128 (3-End)
      • expression tag (2)
      • engineered (220)
    Domains in SCOPe 2.08: d3gbuc1, d3gbuc2
  • Chain 'D':
    Compound: Uncharacterized sugar kinase PH1459
    Species: Pyrococcus horikoshii [TaxId:70601]
    Gene: PH1459, PHCC008
    Database cross-references and differences (RAF-indexed):
    • Uniprot O59128 (3-End)
      • expression tag (2)
      • engineered (220)
    Domains in SCOPe 2.08: d3gbud1, d3gbud2
  • Heterogens: ATP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3gbuA (A:)
msliasigellidlisveegdlkdvrlfekhpggapanvavgvsrlgvkssliskvgndp
fgeylieelskenvdtrgivkdekkhtgivfvqlkgaspsfllyddvayfnmtlndinwd
iveeakivnfgsvilarnpsretvmkvikkikgssliafdvnlrldlwrgqeeemikvle
esikladivkaseeevlylenqgvevkgsmltaitlgpkgfrliknetvvdvpsynvnpl
dttgagdafmaallvgilklkgldllklgkfanlvaalstqkrgawstprkdellkykea
revlaeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3gbuA (A:)
liasigellidlisveegdlkdvrlfekhpggapanvavgvsrlgvkssliskvgndpfg
eylieelskenvdtrgivkdekkhtgivfvqlkgaspsfllyddvayfnmtlndinwdiv
eeakivnfgsvilarnpsretvmkvikkikgssliafdvnlrldlwrgqeeemikvlees
ikladivkaseeevlylenqgvevkgsmltaitlgpkgfrliknetvvdvpsynvnpldt
tgagdafmaallvgilklkgldllklgkfanlvaalstqkrgawstprkdellkykeare
vl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3gbuB (B:)
msliasigellidlisveegdlkdvrlfekhpggapanvavgvsrlgvkssliskvgndp
fgeylieelskenvdtrgivkdekkhtgivfvqlkgaspsfllyddvayfnmtlndinwd
iveeakivnfgsvilarnpsretvmkvikkikgssliafdvnlrldlwrgqeeemikvle
esikladivkaseeevlylenqgvevkgsmltaitlgpkgfrliknetvvdvpsynvnpl
dttgagdafmaallvgilklkgldllklgkfanlvaalstqkrgawstprkdellkykea
revlaeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3gbuB (B:)
liasigellidlisveegdlkdvrlfekhpggapanvavgvsrlgvkssliskvgndpfg
eylieelskenvdtrgivkdekkhtgivfvqlkgaspsfllyddvayfnmtlndinwdiv
eeakivnfgsvilarnpsretvmkvikkikgssliafdvnlrldlwrgqeeemikvlees
ikladivkaseeevlylenqgvevkgsmltaitlgpkgfrliknetvvdvpsynvnpldt
tgagdafmaallvgilklkgldllklgkfanlvaalstqkrgawstprkdellkykeare
vl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3gbuC (C:)
msliasigellidlisveegdlkdvrlfekhpggapanvavgvsrlgvkssliskvgndp
fgeylieelskenvdtrgivkdekkhtgivfvqlkgaspsfllyddvayfnmtlndinwd
iveeakivnfgsvilarnpsretvmkvikkikgssliafdvnlrldlwrgqeeemikvle
esikladivkaseeevlylenqgvevkgsmltaitlgpkgfrliknetvvdvpsynvnpl
dttgagdafmaallvgilklkgldllklgkfanlvaalstqkrgawstprkdellkykea
revlaeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3gbuC (C:)
liasigellidlisveegdlkdvrlfekhpggapanvavgvsrlgvkssliskvgndpfg
eylieelskenvdtrgivkdekkhtgivfvqlkgaspsfllyddvayfnmtlndinwdiv
eeakivnfgsvilarnpsretvmkvikkikgssliafdvnlrldlwrgqeeemikvlees
ikladivkaseeevlylenqgvevkgsmltaitlgpkgfrliknetvvdvpsynvnpldt
tgagdafmaallvgilklkgldllklgkfanlvaalstqkrgawstprkdellkykeare
vl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3gbuD (D:)
msliasigellidlisveegdlkdvrlfekhpggapanvavgvsrlgvkssliskvgndp
fgeylieelskenvdtrgivkdekkhtgivfvqlkgaspsfllyddvayfnmtlndinwd
iveeakivnfgsvilarnpsretvmkvikkikgssliafdvnlrldlwrgqeeemikvle
esikladivkaseeevlylenqgvevkgsmltaitlgpkgfrliknetvvdvpsynvnpl
dttgagdafmaallvgilklkgldllklgkfanlvaalstqkrgawstprkdellkykea
revlaeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3gbuD (D:)
liasigellidlisveegdlkdvrlfekhpggapanvavgvsrlgvkssliskvgndpfg
eylieelskenvdtrgivkdekkhtgivfvqlkgaspsfllyddvayfnmtlndinwdiv
eeakivnfgsvilarnpsretvmkvikkikgssliafdvnlrldlwrgqeeemikvlees
ikladivkaseeevlylenqgvevkgsmltaitlgpkgfrliknetvvdvpsynvnpldt
tgagdafmaallvgilklkgldllklgkfanlvaalstqkrgawstprkdellkykeare
vl