PDB entry 3gad

View 3gad on RCSB PDB site
Description: Structure of apomif
Class: Cytokine
Keywords: macrophage migration inhibitory factor, Cytokine
Deposited on 2009-02-17, released 2009-12-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.177
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Macrophage migration inhibitory factor-like protein
    Species: Plasmodium yoelii yoelii [TaxId:73239]
    Gene: MIF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gada_
  • Chain 'B':
    Compound: Macrophage migration inhibitory factor-like protein
    Species: Plasmodium yoelii yoelii [TaxId:73239]
    Gene: MIF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gadb_
  • Chain 'C':
    Compound: Macrophage migration inhibitory factor-like protein
    Species: Plasmodium yoelii yoelii [TaxId:73239]
    Gene: MIF
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1HEA2 (0-114)
      • expression tag (115-116)
    Domains in SCOPe 2.08: d3gadc1, d3gadc2
  • Chain 'D':
    Compound: Macrophage migration inhibitory factor-like protein
    Species: Plasmodium yoelii yoelii [TaxId:73239]
    Gene: MIF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3gadd_
  • Chain 'E':
    Compound: Macrophage migration inhibitory factor-like protein
    Species: Plasmodium yoelii yoelii [TaxId:73239]
    Gene: MIF
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1HEA2 (0-114)
      • expression tag (115-116)
    Domains in SCOPe 2.08: d3gade1, d3gade2
  • Chain 'F':
    Compound: Macrophage migration inhibitory factor-like protein
    Species: Plasmodium yoelii yoelii [TaxId:73239]
    Gene: MIF
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1HEA2 (0-114)
      • expression tag (115-116)
    Domains in SCOPe 2.08: d3gadf1, d3gadf2
  • Heterogens: SO4, ACY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3gadA (A:)
pccelitnisipddkaqnalseiedaisnvlgkpvayimsnydyqknlrfsgsnegycfv
rltsigginrsnnssladkitkilsnhlgvkprrvyiefrdcsaqnfafsgslfgle

    Sequence, based on observed residues (ATOM records): (download) 
    >3gadA (A:)
pccelitnisipddkaqnalseiedaisnvlgkpvayimsnydyqknlrfsgsnegycfv
rltsigginrsnnssladkitkilsnhlgvkprrvyiefrdcsaqnfafsgslfg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3gadB (B:)
pccelitnisipddkaqnalseiedaisnvlgkpvayimsnydyqknlrfsgsnegycfv
rltsigginrsnnssladkitkilsnhlgvkprrvyiefrdcsaqnfafsgslfgle

    Sequence, based on observed residues (ATOM records): (download) 
    >3gadB (B:)
pccelitnisipddkaqnalseiedaisnvlgkpvayimsnydyqknlrfsgsnegycfv
rltsigginrsnnssladkitkilsnhlgvkprrvyiefrdcsaqnfafsgslfg

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3gadC (C:)
pccelitnisipddkaqnalseiedaisnvlgkpvayimsnydyqknlrfsgsnegycfv
rltsigginrsnnssladkitkilsnhlgvkprrvyiefrdcsaqnfafsgslfgle

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3gadD (D:)
pccelitnisipddkaqnalseiedaisnvlgkpvayimsnydyqknlrfsgsnegycfv
rltsigginrsnnssladkitkilsnhlgvkprrvyiefrdcsaqnfafsgslfgle

    Sequence, based on observed residues (ATOM records): (download) 
    >3gadD (D:)
pccelitnisipddkaqnalseiedaisnvlgkpvayimsnydyqknlrfsgsnegycfv
rltsigginrsnnssladkitkilsnhlgvkprrvyiefrdcsaqnfafsgslfg

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3gadE (E:)
pccelitnisipddkaqnalseiedaisnvlgkpvayimsnydyqknlrfsgsnegycfv
rltsigginrsnnssladkitkilsnhlgvkprrvyiefrdcsaqnfafsgslfgle

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3gadF (F:)
pccelitnisipddkaqnalseiedaisnvlgkpvayimsnydyqknlrfsgsnegycfv
rltsigginrsnnssladkitkilsnhlgvkprrvyiefrdcsaqnfafsgslfgle