PDB entry 3g9r

View 3g9r on RCSB PDB site
Description: structure of the hiv-1 gp41 membrane-proximal ectodomain region in a putative prefusion conformation
Deposited on 2009-02-13, released 2009-05-12
The last revision was dated 2021-10-20, with a file datestamp of 2021-10-15.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fusion complex of HIV-1 Envelope glycoprotein and Saccharomyces cerevisiae General control protein GCN4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4QX39 (0-22)
    • Uniprot P03069 (23-41)
      • engineered mutation (26)
      • engineered mutation (29-32)
      • engineered mutation (36-37)
      • engineered mutation (39)
  • Chain 'B':
    Compound: Fusion complex of HIV-1 Envelope glycoprotein and Saccharomyces cerevisiae General control protein GCN4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4QX39 (0-22)
    • Uniprot P03069 (23-41)
      • engineered mutation (26)
      • engineered mutation (29-32)
      • engineered mutation (36-37)
      • engineered mutation (39)
  • Chain 'C':
    Compound: Fusion complex of HIV-1 Envelope glycoprotein and Saccharomyces cerevisiae General control protein GCN4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4QX39 (0-22)
    • Uniprot P03069 (23-41)
      • engineered mutation (26)
      • engineered mutation (29-32)
      • engineered mutation (36-37)
      • engineered mutation (39)
  • Chain 'D':
    Compound: Fusion complex of HIV-1 Envelope glycoprotein and Saccharomyces cerevisiae General control protein GCN4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4QX39 (0-22)
    • Uniprot P03069 (23-41)
      • engineered mutation (26)
      • engineered mutation (29-32)
      • engineered mutation (36-37)
      • engineered mutation (39)
  • Chain 'E':
    Compound: Fusion complex of HIV-1 Envelope glycoprotein and Saccharomyces cerevisiae General control protein GCN4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4QX39 (0-22)
    • Uniprot P03069 (23-41)
      • engineered mutation (26)
      • engineered mutation (29-32)
      • engineered mutation (36-37)
      • engineered mutation (39)
  • Chain 'F':
    Compound: Fusion complex of HIV-1 Envelope glycoprotein and Saccharomyces cerevisiae General control protein GCN4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4QX39 (0-22)
    • Uniprot P03069 (23-41)
      • engineered mutation (26)
      • engineered mutation (29-32)
      • engineered mutation (36-37)
      • engineered mutation (39)
  • Heterogens: PO4, MPD, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >3g9rA (A:)
eldkwaslwnwfnitnwlwyikieelkskikrieneikrikk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3g9rB (B:)
eldkwaslwnwfnitnwlwyikieelkskikrieneikrikk

    Sequence, based on observed residues (ATOM records):
    >3g9rB (B:)
dkwaslwnwfnitnwlwyikieelkskikrieneikrikk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3g9rC (C:)
eldkwaslwnwfnitnwlwyikieelkskikrieneikrikk

    Sequence, based on observed residues (ATOM records):
    >3g9rC (C:)
dkwaslwnwfnitnwlwyikieelkskikrieneikrikk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3g9rD (D:)
eldkwaslwnwfnitnwlwyikieelkskikrieneikrikk

    Sequence, based on observed residues (ATOM records):
    >3g9rD (D:)
ldkwaslwnwfnitnwlwyikieelkskikrieneikrikk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3g9rE (E:)
eldkwaslwnwfnitnwlwyikieelkskikrieneikrikk

    Sequence, based on observed residues (ATOM records):
    >3g9rE (E:)
dkwaslwnwfnitnwlwyikieelkskikrieneikrikk

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3g9rF (F:)
eldkwaslwnwfnitnwlwyikieelkskikrieneikrikk

    Sequence, based on observed residues (ATOM records):
    >3g9rF (F:)
ldkwaslwnwfnitnwlwyikieelkskikrieneikrikk