PDB entry 3g9j

View 3g9j on RCSB PDB site
Description: GR DNA binding domain:Pal, 18bp complex-36
Class: transcription/DNA
Keywords: glucocorticoid, DNA-binding, allostery, lever arm, transcription, hormone, Alternative initiation, Chromatin regulator, Cytoplasm, Lipid-binding, Metal-binding, Nucleus, Phosphoprotein, Polymorphism, Receptor, Steroid-binding, Transcription regulation, Ubl conjugation, Zinc, Zinc-finger, TRANSCRIPTION/DNA COMPLEX
Deposited on 2009-02-13, released 2009-04-21
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-06-02, with a file datestamp of 2009-05-29.
Experiment type: XRAY
Resolution: 2.32 Å
R-factor: 0.188
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glucocorticoid receptor
    Species: Rattus norvegicus [TaxId:10116]
    Gene: NR3C1, GRL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06536 (4-End)
      • expression tag (1-3)
    Domains in SCOPe 2.06: d3g9ja1, d3g9ja2
  • Chain 'B':
    Compound: Glucocorticoid receptor
    Species: Rattus norvegicus [TaxId:10116]
    Gene: NR3C1, GRL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06536 (4-End)
      • expression tag (1-3)
    Domains in SCOPe 2.06: d3g9jb1, d3g9jb2
  • Chain 'C':
    Compound: DNA (5'-d(*cp*cp*ap*gp*ap*ap*cp*ap*ap*ap*ap*tp*gp*tp*tp*cp*tp*g)-3')
  • Chain 'D':
    Compound: DNA (5'-d(*cp*cp*ap*gp*ap*ap*cp*ap*tp*tp*tp*tp*gp*tp*tp*cp*tp*g)-3')
  • Heterogens: EDO, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3g9jA (A:)
gshmclvcsdeasgchygvltcgsckvffkravegqhnylcagrndciidkirrkncpac
ryrkclqagmnlearktkkkikgiqqatag

    Sequence, based on observed residues (ATOM records): (download) 
    >3g9jA (A:)
shmclvcsdeasgchygvltcgsckvffkravegqhnylcagrndciidkirrkncpacr
yrkclqagmnlear

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3g9jB (B:)
gshmclvcsdeasgchygvltcgsckvffkravegqhnylcagrndciidkirrkncpac
ryrkclqagmnlearktkkkikgiqqatag

    Sequence, based on observed residues (ATOM records): (download) 
    >3g9jB (B:)
shmclvcsdeasgchygvltcgsckvffkravegqhnylcagrndciidkirrkncpacr
yrkclqagmnlearktkkk

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.