PDB entry 3g7k

View 3g7k on RCSB PDB site
Description: Crystal Structure of Methylitaconate-delta-isomerase
Class: isomerase
Keywords: DapF family fold, closed conformation, open conformation, Isomerase
Deposited on 2009-02-10, released 2009-07-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-10-27, with a file datestamp of 2009-10-23.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.203
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3-methylitaconate isomerase
    Species: Eubacterium barkeri [TaxId:1528]
    Gene: Mii
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3g7ka1, d3g7ka2
  • Chain 'B':
    Compound: 3-methylitaconate isomerase
    Species: Eubacterium barkeri [TaxId:1528]
    Gene: Mii
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0QLE6 (Start-379)
      • expression tag (380-387)
    Domains in SCOPe 2.08: d3g7kb1, d3g7kb2, d3g7kb3
  • Chain 'C':
    Compound: 3-methylitaconate isomerase
    Species: Eubacterium barkeri [TaxId:1528]
    Gene: Mii
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3g7kc1, d3g7kc2
  • Chain 'D':
    Compound: 3-methylitaconate isomerase
    Species: Eubacterium barkeri [TaxId:1528]
    Gene: Mii
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3g7kd1, d3g7kd2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3g7kA (A:)
msdqmripcvimragtskgiflkgndlpadqelrdkvilrifgspdvrqidglagadplt
sklaiigpsthpdadvdytfaqvsitdavvdyngncgnisagvgpfaidesfvkavepmt
rvcihntntgkllyaevevedgkakvsgdckidgvpgtnapelmdfsdtagaatgkvlpt
gnvvdvlstskgdidvsivdvanpcifvhakdvnmtgtetpdvingnadllayleeirak
ccvkigmaatekeasekspafpmiafvtkpedyvdfstgntisgddvdlvsrlmfmqvlh
ktyagtatactgsaaripgtivnqvlrdtgdedtvrighpagvipvvsivkdgkvekaal
irtarrimegyvyvekaklvgsawshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3g7kA (A:)
sdqmripcvimragtskgiflkgndlpadqelrdkvilrifgspdvrqidglagadplts
klaiigpsthpdadvdytfaqvsitdavvdyngncgnisagvgpfaidesfvkavepmtr
vcihntntgkllyaevevedgkakvsgdckidgvpgtnapelmdfsdtagaatgkvlptg
nvvdvlstskgdidvsivdvanpcifvhakdvnmtgtetpdvingnadllayleeirakc
cvkigmaatekeasekspafpmiafvtkpedyvdfstgntisgddvdlvsrlmfmqvlhk
tyagtatactgsaaripgtivnqvlrdtgdedtvrighpagvipvvsivkdgkvekaali
rtarrimegyvyvekaklv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3g7kB (B:)
msdqmripcvimragtskgiflkgndlpadqelrdkvilrifgspdvrqidglagadplt
sklaiigpsthpdadvdytfaqvsitdavvdyngncgnisagvgpfaidesfvkavepmt
rvcihntntgkllyaevevedgkakvsgdckidgvpgtnapelmdfsdtagaatgkvlpt
gnvvdvlstskgdidvsivdvanpcifvhakdvnmtgtetpdvingnadllayleeirak
ccvkigmaatekeasekspafpmiafvtkpedyvdfstgntisgddvdlvsrlmfmqvlh
ktyagtatactgsaaripgtivnqvlrdtgdedtvrighpagvipvvsivkdgkvekaal
irtarrimegyvyvekaklvgsawshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3g7kB (B:)
sdqmripcvimragtskgiflkgndlpadqelrdkvilrifgspdvrqidglagadplts
klaiigpsthpdadvdytfaqvsitdavvdyngncgnisagvgpfaidesfvkavepmtr
vcihntntgkllyaevevedgkakvsgdckidgvpgtnapelmdfsdtagaatgkvlptg
nvvdvlstskgdidvsivdvanpcifvhakdvnmtgtetpdvingnadllayleeirakc
cvkigmaatekeasekspafpmiafvtkpedyvdfstgntisgddvdlvsrlmfmqvlhk
tyagtatactgsaaripgtivnqvlrdtgdedtvrighpagvipvvsivkdgkvekaali
rtarrimegyvyvekaklvgsawshpq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3g7kC (C:)
msdqmripcvimragtskgiflkgndlpadqelrdkvilrifgspdvrqidglagadplt
sklaiigpsthpdadvdytfaqvsitdavvdyngncgnisagvgpfaidesfvkavepmt
rvcihntntgkllyaevevedgkakvsgdckidgvpgtnapelmdfsdtagaatgkvlpt
gnvvdvlstskgdidvsivdvanpcifvhakdvnmtgtetpdvingnadllayleeirak
ccvkigmaatekeasekspafpmiafvtkpedyvdfstgntisgddvdlvsrlmfmqvlh
ktyagtatactgsaaripgtivnqvlrdtgdedtvrighpagvipvvsivkdgkvekaal
irtarrimegyvyvekaklvgsawshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3g7kC (C:)
sdqmripcvimragtskgiflkgndlpadqelrdkvilrifgspdvrqidglagadplts
klaiigpsthpdadvdytfaqvsitdavvdyngncgnisagvgpfaidesfvkavepmtr
vcihntntgkllyaevevedgkakvsgdckidgvpgtnapelmdfsdtagaatgkvdtvr
ighpagvipvvsivkdgkvekaalirtarrimegyvyvekaklv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3g7kD (D:)
msdqmripcvimragtskgiflkgndlpadqelrdkvilrifgspdvrqidglagadplt
sklaiigpsthpdadvdytfaqvsitdavvdyngncgnisagvgpfaidesfvkavepmt
rvcihntntgkllyaevevedgkakvsgdckidgvpgtnapelmdfsdtagaatgkvlpt
gnvvdvlstskgdidvsivdvanpcifvhakdvnmtgtetpdvingnadllayleeirak
ccvkigmaatekeasekspafpmiafvtkpedyvdfstgntisgddvdlvsrlmfmqvlh
ktyagtatactgsaaripgtivnqvlrdtgdedtvrighpagvipvvsivkdgkvekaal
irtarrimegyvyvekaklvgsawshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3g7kD (D:)
sdqmripcvimragtskgiflkgndlpadqelrdkvilrifgspdvrqidglagadplts
klaiigpsthpdadvdytfaqvsitdavvdyngncgnisagvgpfaidesfvkavepmtr
vcihntntgkllyaevevedgkakvsgdckidgvpgtnapelmdfsdtagaatgkvlptg
nvvdvlstskgdidvsivdvanpcifvhakdvnmtgtetpdvingnadllayleeirakc
cvkigmaatekeasekspafpmiafvtkpedyvdfstgntisgddvdlvsrlmfmqvlhk
tyagtatactgsaaripgtivnqvlrdtgdedtvrighpagvipvvsivkdgkvekaali
rtarrimegyvyvekaklv