PDB entry 3g5p

View 3g5p on RCSB PDB site
Description: Structure and activity of human mitochondrial peptide deformylase, a novel cancer target
Class: hydrolase
Keywords: PEPTIDE DEFORMYLASE, HUMAN, MITOCHONDRIA, Hydrolase, Iron, Metal-binding, Mitochondrion, Protein biosynthesis, Transit peptide
Deposited on 2009-02-05, released 2009-04-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.162
AEROSPACI score: 0.57 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptide deformylase, mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: PDF, PDF1A
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9HBH1 (3-182)
      • expression tag (0-2)
    Domains in SCOPe 2.08: d3g5pa1, d3g5pa2
  • Chain 'B':
    Compound: Peptide deformylase, mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: PDF, PDF1A
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9HBH1 (3-182)
      • expression tag (0-2)
    Domains in SCOPe 2.08: d3g5pb1, d3g5pb2
  • Chain 'C':
    Compound: Peptide deformylase, mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: PDF, PDF1A
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9HBH1 (3-182)
      • expression tag (0-2)
    Domains in SCOPe 2.08: d3g5pc1, d3g5pc2
  • Chain 'D':
    Compound: Peptide deformylase, mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: PDF, PDF1A
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9HBH1 (3-182)
      • expression tag (0-2)
    Domains in SCOPe 2.08: d3g5pd1, d3g5pd2
  • Heterogens: CO, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3g5pA (A:)
hmsfshvcqvgdpvlrgvaapveraqlggpelqrltqrlvqvmrrrrcvglsapqlgvpr
qvlalelpealcrecpprqralrqmepfplrvfvnpslrvldsrlvtfpegcesvagfla
cvprfqavqisgldpngeqvvwqasgwaariiqhemdhlqgclfidkmdsrtftnvywmk
vnd

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3g5pB (B:)
hmsfshvcqvgdpvlrgvaapveraqlggpelqrltqrlvqvmrrrrcvglsapqlgvpr
qvlalelpealcrecpprqralrqmepfplrvfvnpslrvldsrlvtfpegcesvagfla
cvprfqavqisgldpngeqvvwqasgwaariiqhemdhlqgclfidkmdsrtftnvywmk
vnd

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3g5pC (C:)
hmsfshvcqvgdpvlrgvaapveraqlggpelqrltqrlvqvmrrrrcvglsapqlgvpr
qvlalelpealcrecpprqralrqmepfplrvfvnpslrvldsrlvtfpegcesvagfla
cvprfqavqisgldpngeqvvwqasgwaariiqhemdhlqgclfidkmdsrtftnvywmk
vnd

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3g5pD (D:)
hmsfshvcqvgdpvlrgvaapveraqlggpelqrltqrlvqvmrrrrcvglsapqlgvpr
qvlalelpealcrecpprqralrqmepfplrvfvnpslrvldsrlvtfpegcesvagfla
cvprfqavqisgldpngeqvvwqasgwaariiqhemdhlqgclfidkmdsrtftnvywmk
vnd