PDB entry 3g3b

View 3g3b on RCSB PDB site
Description: Structure of a lamprey variable lymphocyte receptor mutant in complex with a protein antigen
Class: hydrolase/immune system
Keywords: VLR, antibody, x-ray, crystallography, Allergen, Antimicrobial, Bacteriolytic enzyme, Glycosidase, Hydrolase, HYDROLASE/IMMUNE SYSTEM COMPLEX
Deposited on 2009-02-02, released 2009-06-23
The last revision prior to the SCOPe 2.03 freeze date was dated 2010-01-19, with a file datestamp of 2010-01-15.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.244
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: variable lymphocyte receptor VLRB.2D
    Species: Petromyzon marinus [TaxId:7757]
    Gene: VLR
    Database cross-references and differences (RAF-indexed):
    • PDB 3G3B (Start-169)
    Domains in SCOPe 2.03: d3g3ba_
  • Chain 'B':
    Compound: Lysozyme C
    Species: Gallus gallus [TaxId:9031]
    Gene: lysozyme, LYZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3g3bb_
  • Chain 'C':
    Compound: variable lymphocyte receptor VLRB.2D
    Species: Petromyzon marinus [TaxId:7757]
    Gene: VLR
    Database cross-references and differences (RAF-indexed):
    • PDB 3G3B
    Domains in SCOPe 2.03: d3g3bc_
  • Chain 'D':
    Compound: Lysozyme C
    Species: Gallus gallus [TaxId:9031]
    Gene: lysozyme, LYZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3g3bd_
  • Chain 'E':
    Compound: variable lymphocyte receptor VLRB.2D
    Species: Petromyzon marinus [TaxId:7757]
    Gene: VLR
    Database cross-references and differences (RAF-indexed):
    • PDB 3G3B
  • Chain 'F':
    Compound: Lysozyme C
    Species: Gallus gallus [TaxId:9031]
    Gene: lysozyme, LYZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3g3bf_
  • Chain 'G':
    Compound: variable lymphocyte receptor VLRB.2D
    Species: Petromyzon marinus [TaxId:7757]
    Gene: VLR
    Database cross-references and differences (RAF-indexed):
    • PDB 3G3B
  • Chain 'H':
    Compound: Lysozyme C
    Species: Gallus gallus [TaxId:9031]
    Gene: lysozyme, LYZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3g3bh_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3g3bA (A:)
    macpsqcscsgttvdcsgkslasvptgiptttqvlylydnritklepgvfdrltqltrld
    ldnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlrslthiwllnnpwdcacsd
    ilylsrwisqhpwlvfgylnldhdsarcsgtntpvravtkastspskcpg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g3bA (A:)
    acpsqcscsgttvdcsgkslasvptgiptttqvlylydnritklepgvfdrltqltrldl
    dnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlrslthiwllnnpwdcacsdi
    lylsrwisqhpwlvfgylnldhdsarcsgtntpvravtkastspskcpg
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3g3bB (B:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
    qawirgcrl
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g3bB (B:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
    qawirgc
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3g3bC (C:)
    macpsqcscsgttvdcsgkslasvptgiptttqvlylydnritklepgvfdrltqltrld
    ldnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlrslthiwllnnpwdcacsd
    ilylsrwisqhpwlvfgylnldhdsarcsgtntpvravtkastspskcpg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g3bC (C:)
    acpsqcscsgttvdcsgkslasvptgiptttqvlylydnritklepgvfdrltqltrldl
    dnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlrslthiwllnnpwdcacsdi
    lylsrwisqhpwlvfgylnldhdsarcsgtntpvravtkastspskc
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3g3bD (D:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
    qawirgcrl
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g3bD (D:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsgmnawvawrnrckgtdvqaw
    irgc
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3g3bF (F:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
    qawirgcrl
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g3bF (F:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgmnawvawrnrckgtdvqa
    wirgc
    

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3g3bH (H:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
    qawirgcrl
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g3bH (H:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivgmnawvawrnrckgtdvqawi
    rgc