PDB entry 3g3a

View 3g3a on RCSB PDB site
Description: Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen
Class: hydrolase/immune system
Keywords: VLR, antibody, x-ray, crystallography, Allergen, Antimicrobial, Bacteriolytic enzyme, Glycosidase, Hydrolase, HYDROLASE/IMMUNE SYSTEM COMPLEX
Deposited on 2009-02-02, released 2009-06-23
The last revision prior to the SCOPe 2.06 freeze date was dated 2010-01-19, with a file datestamp of 2010-01-15.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.222
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: variable lymphocyte receptor VLRB.2D
    Species: Petromyzon marinus [TaxId:7757]
    Gene: VLR
    Database cross-references and differences (RAF-indexed):
    • PDB 3G3A
    Domains in SCOPe 2.06: d3g3aa_
  • Chain 'B':
    Compound: Lysozyme C
    Species: Gallus gallus [TaxId:9031]
    Gene: lysozyme, LYZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3g3ab_
  • Chain 'C':
    Compound: variable lymphocyte receptor VLRB.2D
    Species: Petromyzon marinus [TaxId:7757]
    Gene: VLR
    Database cross-references and differences (RAF-indexed):
    • PDB 3G3A
    Domains in SCOPe 2.06: d3g3ac_
  • Chain 'D':
    Compound: Lysozyme C
    Species: Gallus gallus [TaxId:9031]
    Gene: lysozyme, LYZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3g3ad_
  • Chain 'E':
    Compound: variable lymphocyte receptor VLRB.2D
    Species: Petromyzon marinus [TaxId:7757]
    Gene: VLR
    Database cross-references and differences (RAF-indexed):
    • PDB 3G3A
    Domains in SCOPe 2.06: d3g3ae_
  • Chain 'F':
    Compound: Lysozyme C
    Species: Gallus gallus [TaxId:9031]
    Gene: lysozyme, LYZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3g3af_
  • Chain 'G':
    Compound: variable lymphocyte receptor VLRB.2D
    Species: Petromyzon marinus [TaxId:7757]
    Gene: VLR
    Database cross-references and differences (RAF-indexed):
    • PDB 3G3A
    Domains in SCOPe 2.06: d3g3ag_
  • Chain 'H':
    Compound: Lysozyme C
    Species: Gallus gallus [TaxId:9031]
    Gene: lysozyme, LYZ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3g3ah_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3g3aA (A:)
    marirargsacpsqcscsgttvdcsgkslasvptgiptttqvlylydnqitklepgvfdr
    ltqltrldldnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlkslthiwllnn
    pwdcacsdilylsrwisqhpglvfgylnldpdsarcsgtntpvravteastspskcpg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g3aA (A:)
    acpsqcscsgttvdcsgkslasvptgiptttqvlylydnqitklepgvfdrltqltrldl
    dnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlkslthiwllnnpwdcacsdi
    lylsrwisqhpglvfgylnldpdsarcsgtntpvravteastspskc
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3g3aB (B:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
    qawirgcrl
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g3aB (B:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdggmnawvawrnrckgtdvq
    awirgc
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3g3aC (C:)
    marirargsacpsqcscsgttvdcsgkslasvptgiptttqvlylydnqitklepgvfdr
    ltqltrldldnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlkslthiwllnn
    pwdcacsdilylsrwisqhpglvfgylnldpdsarcsgtntpvravteastspskcpg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g3aC (C:)
    acpsqcscsgttvdcsgkslasvptgiptttqvlylydnqitklepgvfdrltqltrldl
    dnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlkslthiwllnnpwdcacsdi
    lylsrwisqhpglvfgylnldpdsarcsgtntpvravteastspskc
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3g3aD (D:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
    qawirgcrl
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g3aD (D:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdggmnawvawrnrckgtdvq
    awirgc
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3g3aE (E:)
    marirargsacpsqcscsgttvdcsgkslasvptgiptttqvlylydnqitklepgvfdr
    ltqltrldldnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlkslthiwllnn
    pwdcacsdilylsrwisqhpglvfgylnldpdsarcsgtntpvravteastspskcpg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g3aE (E:)
    acpsqcscsgttvdcsgkslasvptgiptttqvlylydnqitklepgvfdrltqltrldl
    dnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlkslthiwllnnpwdcacsdi
    lylsrwisqhpglvfgylnldpdsarcsgtntpvravteastspskc
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3g3aF (F:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
    qawirgcrl
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g3aF (F:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdggmnawvawrnrckgtdvq
    awirgc
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3g3aG (G:)
    marirargsacpsqcscsgttvdcsgkslasvptgiptttqvlylydnqitklepgvfdr
    ltqltrldldnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlkslthiwllnn
    pwdcacsdilylsrwisqhpglvfgylnldpdsarcsgtntpvravteastspskcpg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g3aG (G:)
    acpcscsgttvdcsgkslasvptgiptttqvlylydnqitklepgvfdrltqltrldldn
    nqltvlpagvfdkltqltqlslndnqlksiprgafdnlkslthiwllnnpwdcacsdily
    lsrwisqhpglvfgylnldpdsarcsgtntpvravteastspskc
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3g3aH (H:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
    qawirgcrl
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g3aH (H:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsgmnawvawrnrckgtdvqaw
    irgc