PDB entry 3g3a
View 3g3a on RCSB PDB site
Description: Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen
Class: hydrolase/immune system
Keywords: VLR, antibody, x-ray, crystallography, Allergen, Antimicrobial, Bacteriolytic enzyme, Glycosidase, Hydrolase, HYDROLASE/IMMUNE SYSTEM COMPLEX
Deposited on
2009-02-02, released
2009-06-23
The last revision prior to the SCOPe 2.03 freeze date was dated
2010-01-19, with a file datestamp of
2010-01-15.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.222
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: variable lymphocyte receptor VLRB.2D
Species: Petromyzon marinus [TaxId:7757]
Gene: VLR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3g3aa_ - Chain 'B':
Compound: Lysozyme C
Species: Gallus gallus [TaxId:9031]
Gene: lysozyme, LYZ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3g3ab_ - Chain 'C':
Compound: variable lymphocyte receptor VLRB.2D
Species: Petromyzon marinus [TaxId:7757]
Gene: VLR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3g3ac_ - Chain 'D':
Compound: Lysozyme C
Species: Gallus gallus [TaxId:9031]
Gene: lysozyme, LYZ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3g3ad_ - Chain 'E':
Compound: variable lymphocyte receptor VLRB.2D
Species: Petromyzon marinus [TaxId:7757]
Gene: VLR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3g3ae_ - Chain 'F':
Compound: Lysozyme C
Species: Gallus gallus [TaxId:9031]
Gene: lysozyme, LYZ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3g3af_ - Chain 'G':
Compound: variable lymphocyte receptor VLRB.2D
Species: Petromyzon marinus [TaxId:7757]
Gene: VLR
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Lysozyme C
Species: Gallus gallus [TaxId:9031]
Gene: lysozyme, LYZ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3g3ah_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3g3aA (A:)
marirargsacpsqcscsgttvdcsgkslasvptgiptttqvlylydnqitklepgvfdr
ltqltrldldnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlkslthiwllnn
pwdcacsdilylsrwisqhpglvfgylnldpdsarcsgtntpvravteastspskcpg
Sequence, based on observed residues (ATOM records): (download)
>3g3aA (A:)
acpsqcscsgttvdcsgkslasvptgiptttqvlylydnqitklepgvfdrltqltrldl
dnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlkslthiwllnnpwdcacsdi
lylsrwisqhpglvfgylnldpdsarcsgtntpvravteastspskc
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3g3aB (B:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
qawirgcrl
Sequence, based on observed residues (ATOM records): (download)
>3g3aB (B:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdggmnawvawrnrckgtdvq
awirgc
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3g3aC (C:)
marirargsacpsqcscsgttvdcsgkslasvptgiptttqvlylydnqitklepgvfdr
ltqltrldldnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlkslthiwllnn
pwdcacsdilylsrwisqhpglvfgylnldpdsarcsgtntpvravteastspskcpg
Sequence, based on observed residues (ATOM records): (download)
>3g3aC (C:)
acpsqcscsgttvdcsgkslasvptgiptttqvlylydnqitklepgvfdrltqltrldl
dnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlkslthiwllnnpwdcacsdi
lylsrwisqhpglvfgylnldpdsarcsgtntpvravteastspskc
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3g3aD (D:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
qawirgcrl
Sequence, based on observed residues (ATOM records): (download)
>3g3aD (D:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdggmnawvawrnrckgtdvq
awirgc
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3g3aE (E:)
marirargsacpsqcscsgttvdcsgkslasvptgiptttqvlylydnqitklepgvfdr
ltqltrldldnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlkslthiwllnn
pwdcacsdilylsrwisqhpglvfgylnldpdsarcsgtntpvravteastspskcpg
Sequence, based on observed residues (ATOM records): (download)
>3g3aE (E:)
acpsqcscsgttvdcsgkslasvptgiptttqvlylydnqitklepgvfdrltqltrldl
dnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlkslthiwllnnpwdcacsdi
lylsrwisqhpglvfgylnldpdsarcsgtntpvravteastspskc
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3g3aF (F:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
qawirgcrl
Sequence, based on observed residues (ATOM records): (download)
>3g3aF (F:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdggmnawvawrnrckgtdvq
awirgc
- Chain 'G':
No sequence available.
- Chain 'H':
Sequence, based on SEQRES records: (download)
>3g3aH (H:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
qawirgcrl
Sequence, based on observed residues (ATOM records): (download)
>3g3aH (H:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsgmnawvawrnrckgtdvqaw
irgc