PDB entry 3g2x

View 3g2x on RCSB PDB site
Description: Structure of mimivirus NDK +Kpn - N62L double mutant complexed with dTDP
Class: transferase
Keywords: nucleoside diphosphate kinase phosphotransferase nucleotide binding, ATP-binding, Kinase, Magnesium, Metal-binding, Nucleotide metabolism, Nucleotide-binding, Phosphoprotein, Transferase
Deposited on 2009-02-01, released 2009-08-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-08-11, with a file datestamp of 2009-08-07.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.207
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoside diphosphate kinase
    Species: Acanthamoeba polyphaga mimivirus [TaxId:212035]
    Gene: MIMI_R418, NDK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5UQL3 (6-End)
      • engineered (66)
      • see remark 999 (96-102)
    Domains in SCOPe 2.08: d3g2xa_
  • Chain 'B':
    Compound: Nucleoside diphosphate kinase
    Species: Acanthamoeba polyphaga mimivirus [TaxId:212035]
    Gene: MIMI_R418, NDK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5UQL3 (6-End)
      • engineered (66)
      • see remark 999 (96-102)
    Domains in SCOPe 2.08: d3g2xb_
  • Chain 'C':
    Compound: Nucleoside diphosphate kinase
    Species: Acanthamoeba polyphaga mimivirus [TaxId:212035]
    Gene: MIMI_R418, NDK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5UQL3 (6-End)
      • expression tag (5)
      • engineered (66)
      • see remark 999 (96-102)
    Domains in SCOPe 2.08: d3g2xc1, d3g2xc2
  • Chain 'D':
    Compound: Nucleoside diphosphate kinase
    Species: Acanthamoeba polyphaga mimivirus [TaxId:212035]
    Gene: MIMI_R418, NDK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5UQL3 (6-End)
      • engineered (66)
      • see remark 999 (96-102)
    Domains in SCOPe 2.08: d3g2xd_
  • Chain 'E':
    Compound: Nucleoside diphosphate kinase
    Species: Acanthamoeba polyphaga mimivirus [TaxId:212035]
    Gene: MIMI_R418, NDK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5UQL3 (6-End)
      • expression tag (5)
      • engineered (66)
      • see remark 999 (96-102)
    Domains in SCOPe 2.08: d3g2xe1, d3g2xe2
  • Chain 'F':
    Compound: Nucleoside diphosphate kinase
    Species: Acanthamoeba polyphaga mimivirus [TaxId:212035]
    Gene: MIMI_R418, NDK
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5UQL3 (6-End)
      • engineered (66)
      • see remark 999 (96-102)
    Domains in SCOPe 2.08: d3g2xf_
  • Heterogens: MG, TYD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3g2xA (A:)
ykkaglqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehse
qsyfndlcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenli
hasdsedsavdeisiwfpetkmetdn

    Sequence, based on observed residues (ATOM records): (download) 
    >3g2xA (A:)
qrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehseqsyfnd
lcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenlihasdse
dsavdeisiwfp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3g2xB (B:)
ykkaglqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehse
qsyfndlcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenli
hasdsedsavdeisiwfpetkmetdn

    Sequence, based on observed residues (ATOM records): (download) 
    >3g2xB (B:)
qrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehseqsyfnd
lcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenlihasdse
dsavdeisiwfp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3g2xC (C:)
ykkaglqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehse
qsyfndlcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenli
hasdsedsavdeisiwfpetkmetdn

    Sequence, based on observed residues (ATOM records): (download) 
    >3g2xC (C:)
lqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehseqsyfn
dlcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenlihasds
edsavdeisiwfp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3g2xD (D:)
ykkaglqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehse
qsyfndlcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenli
hasdsedsavdeisiwfpetkmetdn

    Sequence, based on observed residues (ATOM records): (download) 
    >3g2xD (D:)
qrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehseqsyfnd
lcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenlihasdse
dsavdeisiwfp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3g2xE (E:)
ykkaglqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehse
qsyfndlcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenli
hasdsedsavdeisiwfpetkmetdn

    Sequence, based on observed residues (ATOM records): (download) 
    >3g2xE (E:)
lqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehseqsyfn
dlcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenlihasds
edsavdeisiwfp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3g2xF (F:)
ykkaglqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehse
qsyfndlcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenli
hasdsedsavdeisiwfpetkmetdn

    Sequence, based on observed residues (ATOM records): (download) 
    >3g2xF (F:)
qrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehseqsyfnd
lcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandirenlihasdse
dsavdeisiwfp