PDB entry 3fz7

View 3fz7 on RCSB PDB site
Description: Crystal structure of apo glutamate decarboxylase beta from Escherichia coli
Class: lyase
Keywords: Glutamate decarboxylase, apo, Decarboxylase, Lyase, Membrane, Pyridoxal phosphate
Deposited on 2009-01-23, released 2009-02-03
The last revision prior to the SCOPe 2.02 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.154
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate decarboxylase beta
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: b1493, gadB, JW1488
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3fz7a_
  • Chain 'B':
    Compound: Glutamate decarboxylase beta
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: b1493, gadB, JW1488
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3fz7b_
  • Chain 'C':
    Compound: Glutamate decarboxylase beta
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: b1493, gadB, JW1488
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3fz7c_
  • Chain 'D':
    Compound: Glutamate decarboxylase beta
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: b1493, gadB, JW1488
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3fz7d_
  • Chain 'E':
    Compound: Glutamate decarboxylase beta
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: b1493, gadB, JW1488
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3fz7e_
  • Chain 'F':
    Compound: Glutamate decarboxylase beta
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: b1493, gadB, JW1488
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3fz7f_
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3fz7A (A:)
mdkkqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnl
atfcqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavg
tntigsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelrei
pmrpgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididm
hidaasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelv
fnvdylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiakl
gpyefictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivv
mrimcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht

    Sequence, based on observed residues (ATOM records): (download) 
    >3fz7A (A:)
lldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnlatfcqtwddenv
hklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavgtntigsseacml
ggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelreipmrpgqlfmdpk
rmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididmhidaasggflap
fvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelvfnvdylggqigt
fainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiaklgpyefictgrpd
egipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivvmrimcrrgfemd
faellledykaslkylsdhpklqgiaqqnsfkht

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3fz7B (B:)
mdkkqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnl
atfcqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavg
tntigsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelrei
pmrpgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididm
hidaasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelv
fnvdylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiakl
gpyefictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivv
mrimcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht

    Sequence, based on observed residues (ATOM records): (download) 
    >3fz7B (B:)
elldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnlatfcqtwdden
vhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavgtntigsseacm
lggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelreipmrpgqlfmdp
krmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididmhidaasggfla
pfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelvfnvdylggqig
tfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiaklgpyefictgrp
degipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivvmrimcrrgfem
dfaellledykaslkylsdhpklqgiaqqnsfkht

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3fz7C (C:)
mdkkqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnl
atfcqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavg
tntigsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelrei
pmrpgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididm
hidaasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelv
fnvdylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiakl
gpyefictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivv
mrimcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht

    Sequence, based on observed residues (ATOM records): (download) 
    >3fz7C (C:)
kqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnlatf
cqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavgtnt
igsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelreipmr
pgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididmhid
aasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelvfnv
dylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiaklgpy
efictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivvmri
mcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3fz7D (D:)
mdkkqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnl
atfcqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavg
tntigsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelrei
pmrpgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididm
hidaasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelv
fnvdylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiakl
gpyefictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivv
mrimcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht

    Sequence, based on observed residues (ATOM records): (download) 
    >3fz7D (D:)
lldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnlatfcqtwddenv
hklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavgtntigsseacml
ggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelreipmrpgqlfmdpk
rmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididmhidaasggflap
fvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelvfnvdylggqigt
fainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiaklgpyefictgrpd
egipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivvmrimcrrgfemd
faellledykaslkylsdhpklqgiaqqnsfkht

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3fz7E (E:)
mdkkqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnl
atfcqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavg
tntigsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelrei
pmrpgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididm
hidaasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelv
fnvdylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiakl
gpyefictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivv
mrimcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht

    Sequence, based on observed residues (ATOM records): (download) 
    >3fz7E (E:)
elldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnlatfcqtwdden
vhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavgtntigsseacm
lggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelreipmrpgqlfmdp
krmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididmhidaasggfla
pfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelvfnvdylggqig
tfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiaklgpyefictgrp
degipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivvmrimcrrgfem
dfaellledykaslkylsdhpklqgiaqqnsfkht

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3fz7F (F:)
mdkkqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnl
atfcqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavg
tntigsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelrei
pmrpgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididm
hidaasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelv
fnvdylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiakl
gpyefictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivv
mrimcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht

    Sequence, based on observed residues (ATOM records): (download) 
    >3fz7F (F:)
kkqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnlat
fcqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavgtn
tigsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelreipm
rpgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididmhi
daasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelvfn
vdylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiaklgp
yefictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivvmr
imcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht