PDB entry 3fz6

View 3fz6 on RCSB PDB site
Description: Crystal structure of glutamate decarboxylase beta from Escherichia coli: complex with xenon
Class: lyase
Keywords: Glutamate decarboxylase, pmp form, xenon, Decarboxylase, Lyase, Membrane, Pyridoxal phosphate
Deposited on 2009-01-23, released 2009-02-03
The last revision prior to the SCOPe 2.02 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.82 Å
R-factor: 0.138
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate decarboxylase beta
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: b1493, gadB, JW1488
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3fz6a_
  • Chain 'B':
    Compound: Glutamate decarboxylase beta
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: b1493, gadB, JW1488
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3fz6b_
  • Chain 'C':
    Compound: Glutamate decarboxylase beta
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: b1493, gadB, JW1488
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3fz6c_
  • Chain 'D':
    Compound: Glutamate decarboxylase beta
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: b1493, gadB, JW1488
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3fz6d_
  • Chain 'E':
    Compound: Glutamate decarboxylase beta
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: b1493, gadB, JW1488
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3fz6e_
  • Chain 'F':
    Compound: Glutamate decarboxylase beta
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: b1493, gadB, JW1488
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3fz6f_
  • Heterogens: PMP, XE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3fz6A (A:)
mdkkqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnl
atfcqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavg
tntigsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelrei
pmrpgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididm
hidaasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelv
fnvdylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiakl
gpyefictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivv
mrimcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht

    Sequence, based on observed residues (ATOM records): (download) 
    >3fz6A (A:)
elldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnlatfcqtwdden
vhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavgtntigsseacm
lggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelreipmrpgqlfmdp
krmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididmhidaasggfla
pfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelvfnvdylggqig
tfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiaklgpyefictgrp
degipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivvmrimcrrgfem
dfaellledykaslkylsdhpklqgiaqqnsfkht

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3fz6B (B:)
mdkkqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnl
atfcqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavg
tntigsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelrei
pmrpgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididm
hidaasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelv
fnvdylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiakl
gpyefictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivv
mrimcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht

    Sequence, based on observed residues (ATOM records): (download) 
    >3fz6B (B:)
kqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnlatf
cqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavgtnt
igsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelreipmr
pgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididmhid
aasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelvfnv
dylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiaklgpy
efictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivvmri
mcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3fz6C (C:)
mdkkqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnl
atfcqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavg
tntigsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelrei
pmrpgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididm
hidaasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelv
fnvdylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiakl
gpyefictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivv
mrimcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht

    Sequence, based on observed residues (ATOM records): (download) 
    >3fz6C (C:)
elldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnlatfcqtwdden
vhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavgtntigsseacm
lggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelreipmrpgqlfmdp
krmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididmhidaasggfla
pfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelvfnvdylggqig
tfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiaklgpyefictgrp
degipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivvmrimcrrgfem
dfaellledykaslkylsdhpklqgiaqqnsfkht

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3fz6D (D:)
mdkkqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnl
atfcqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavg
tntigsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelrei
pmrpgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididm
hidaasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelv
fnvdylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiakl
gpyefictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivv
mrimcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht

    Sequence, based on observed residues (ATOM records): (download) 
    >3fz6D (D:)
elldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnlatfcqtwdden
vhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavgtntigsseacm
lggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelreipmrpgqlfmdp
krmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididmhidaasggfla
pfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelvfnvdylggqig
tfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiaklgpyefictgrp
degipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivvmrimcrrgfem
dfaellledykaslkylsdhpklqgiaqqnsfkht

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3fz6E (E:)
mdkkqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnl
atfcqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavg
tntigsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelrei
pmrpgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididm
hidaasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelv
fnvdylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiakl
gpyefictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivv
mrimcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht

    Sequence, based on observed residues (ATOM records): (download) 
    >3fz6E (E:)
kkqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnlat
fcqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavgtn
tigsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelreipm
rpgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididmhi
daasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelvfn
vdylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiaklgp
yefictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivvmr
imcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3fz6F (F:)
mdkkqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnl
atfcqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavg
tntigsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelrei
pmrpgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididm
hidaasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelv
fnvdylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiakl
gpyefictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivv
mrimcrrgfemdfaellledykaslkylsdhpklqgiaqqnsfkht

    Sequence, based on observed residues (ATOM records): (download) 
    >3fz6F (F:)
elldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnlatfcqtwdden
vhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavgtntigsseacm
lggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelreipmrpgqlfmdp
krmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididmhidaasggfla
pfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelvfnvdylggqig
tfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiaklgpyefictgrp
degipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivvmrimcrrgfem
dfaellledykaslkylsdhpklqgiaqqnsfkht