PDB entry 3fyc

View 3fyc on RCSB PDB site
Description: Crystal Structure of Dim1 from the thermophilic archeon, Methanocaldococcus jannaschi
Class: transferase
Keywords: dimethyladenosine transferase, rossmann fold, rna methylase, ribosomal assembly, Methyltransferase, RNA-binding, rRNA processing, S-adenosyl-L-methionine, Transferase
Deposited on 2009-01-22, released 2009-06-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-11-12, with a file datestamp of 2014-11-07.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.209
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Probable dimethyladenosine transferase
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: ksgA, MJ1029
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q58435 (2-264)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d3fyca1, d3fyca2
  • Chain 'B':
    Compound: Probable dimethyladenosine transferase
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: ksgA, MJ1029
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q58435 (2-264)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d3fycb1, d3fycb2
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3fycA (A:)
aaqcflidknfvnkavesanltkddvvleiglgkgilteelaknakkvyvieidkslepy
anklkelynnieiiwgdalkvdlnkldfnkvvanlpyqisspitfklikrgfdlavlmyq
yefakrmvakegtkdygrlsvavqsradveivakvppsafypkpkvysaivkikpnkgky
hienenffddflraifqhrnksvrkalidsskelnynkdemkkiledflntnseiknlin
ekvfklsvkdivnlsnefyrflqnr

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3fycB (B:)
aaqcflidknfvnkavesanltkddvvleiglgkgilteelaknakkvyvieidkslepy
anklkelynnieiiwgdalkvdlnkldfnkvvanlpyqisspitfklikrgfdlavlmyq
yefakrmvakegtkdygrlsvavqsradveivakvppsafypkpkvysaivkikpnkgky
hienenffddflraifqhrnksvrkalidsskelnynkdemkkiledflntnseiknlin
ekvfklsvkdivnlsnefyrflqnr