PDB entry 3fv9

View 3fv9 on RCSB PDB site
Description: Crystal structure of putative mandelate racemase/muconatelactonizing enzyme from ROSEOVARIUS NUBINHIBENS ISM complexed with magnesium
Class: hydrolase
Keywords: STRUCTURAL GENOMICS, MANDELATE RACEMASE/MUCONATELACTONIZING ENZYME, HYDROLASE, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC
Deposited on 2009-01-15, released 2009-01-27
The last revision prior to the SCOPe 2.03 freeze date was dated 2012-10-24, with a file datestamp of 2012-10-19.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.205
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Mandelate racemase/muconate lactonizing enzyme
    Species: Roseovarius nubinhibens ISM [TaxId:89187]
    Gene: ISM_14080
    Database cross-references and differences (RAF-indexed):
    • Uniprot A3SNG0 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.03: d3fv9a1, d3fv9a2
  • Chain 'B':
    Compound: Mandelate racemase/muconate lactonizing enzyme
    Species: Roseovarius nubinhibens ISM [TaxId:89187]
    Gene: ISM_14080
    Database cross-references and differences (RAF-indexed):
    • Uniprot A3SNG0 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.03: d3fv9b1, d3fv9b2
  • Chain 'C':
    Compound: Mandelate racemase/muconate lactonizing enzyme
    Species: Roseovarius nubinhibens ISM [TaxId:89187]
    Gene: ISM_14080
    Database cross-references and differences (RAF-indexed):
    • Uniprot A3SNG0 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.03: d3fv9c1, d3fv9c2
  • Chain 'D':
    Compound: Mandelate racemase/muconate lactonizing enzyme
    Species: Roseovarius nubinhibens ISM [TaxId:89187]
    Gene: ISM_14080
    Database cross-references and differences (RAF-indexed):
    • Uniprot A3SNG0 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.03: d3fv9d1, d3fv9d2
  • Chain 'E':
    Compound: Mandelate racemase/muconate lactonizing enzyme
    Species: Roseovarius nubinhibens ISM [TaxId:89187]
    Gene: ISM_14080
    Database cross-references and differences (RAF-indexed):
    • Uniprot A3SNG0 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.03: d3fv9e1, d3fv9e2
  • Chain 'F':
    Compound: Mandelate racemase/muconate lactonizing enzyme
    Species: Roseovarius nubinhibens ISM [TaxId:89187]
    Gene: ISM_14080
    Database cross-references and differences (RAF-indexed):
    • Uniprot A3SNG0 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.03: d3fv9f1, d3fv9f2
  • Chain 'G':
    Compound: Mandelate racemase/muconate lactonizing enzyme
    Species: Roseovarius nubinhibens ISM [TaxId:89187]
    Gene: ISM_14080
    Database cross-references and differences (RAF-indexed):
    • Uniprot A3SNG0 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.03: d3fv9g1, d3fv9g2
  • Chain 'H':
    Compound: Mandelate racemase/muconate lactonizing enzyme
    Species: Roseovarius nubinhibens ISM [TaxId:89187]
    Gene: ISM_14080
    Database cross-references and differences (RAF-indexed):
    • Uniprot A3SNG0 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.03: d3fv9h1, d3fv9h2
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3fv9A (A:)
mslkitridihrtdlpvrggvyrlsggreyhsydativsietdtgltgwgestpfgstyi
aahaggtraalellapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaag
lplcdmtggrvagpvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpald
aeritacladrqpgewyladanngltvehalrmlsllppgldivleapcaswaetkslra
rcalpllldeliqtetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvq
dtvgsqisfaailhlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglgl
rvnrdalgtpvktfgdpieghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fv9A (A:)
lkitridihrtdlpvrghsydativsietdtgltgwgestpfgstyiaahaggtraalel
lapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaaglplcdmtggrvag
pvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpaldaeritacladrqp
gewyladanngltvehalrmlsllppgldivleapcaswaetkslrarcalpllldeliq
tetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvqdtvgsqisfaail
hlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglglrvnrdalgtpvkt
fgd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3fv9B (B:)
mslkitridihrtdlpvrggvyrlsggreyhsydativsietdtgltgwgestpfgstyi
aahaggtraalellapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaag
lplcdmtggrvagpvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpald
aeritacladrqpgewyladanngltvehalrmlsllppgldivleapcaswaetkslra
rcalpllldeliqtetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvq
dtvgsqisfaailhlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglgl
rvnrdalgtpvktfgdpieghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fv9B (B:)
lkitridihrtdlpvrggeyhsydativsietdtgltgwgestpfgstyiaahaggtraa
lellapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaaglplcdmtggr
vagpvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpaldaeritaclad
rqpgewyladanngltvehalrmlsllppgldivleapcaswaetkslrarcalplllde
liqtetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvqdtvgsqisfa
ailhlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglglrvnrdalgtp
vktfg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3fv9C (C:)
mslkitridihrtdlpvrggvyrlsggreyhsydativsietdtgltgwgestpfgstyi
aahaggtraalellapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaag
lplcdmtggrvagpvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpald
aeritacladrqpgewyladanngltvehalrmlsllppgldivleapcaswaetkslra
rcalpllldeliqtetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvq
dtvgsqisfaailhlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglgl
rvnrdalgtpvktfgdpieghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fv9C (C:)
lkitridihrtdlpvrggvyrlsggreyhsydativsietdtgltgwgestpfgstyiaa
haggtraalellapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaaglp
lcdmtggrvagpvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpaldae
ritacladrqpgewyladanngltvehalrmlsllppgldivleapcaswaetkslrarc
alpllldeliqtetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvqdt
vgsqisfaailhlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglglrv
nrdalgtpvktfgd

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3fv9D (D:)
mslkitridihrtdlpvrggvyrlsggreyhsydativsietdtgltgwgestpfgstyi
aahaggtraalellapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaag
lplcdmtggrvagpvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpald
aeritacladrqpgewyladanngltvehalrmlsllppgldivleapcaswaetkslra
rcalpllldeliqtetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvq
dtvgsqisfaailhlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglgl
rvnrdalgtpvktfgdpieghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fv9D (D:)
lkitridihrtdlpvrggvyrlsggreyhsydativsietdtgltgwgestpfgstyiaa
haggtraalellapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaaglp
lcdmtggrvagpvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpaldae
ritacladrqpgewyladanngltvehalrmlsllppgldivleapcaswaetkslrarc
alpllldeliqtetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvqdt
vgsqisfaailhlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglglrv
nrdalgtpvktfg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3fv9E (E:)
mslkitridihrtdlpvrggvyrlsggreyhsydativsietdtgltgwgestpfgstyi
aahaggtraalellapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaag
lplcdmtggrvagpvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpald
aeritacladrqpgewyladanngltvehalrmlsllppgldivleapcaswaetkslra
rcalpllldeliqtetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvq
dtvgsqisfaailhlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglgl
rvnrdalgtpvktfgdpieghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fv9E (E:)
lkitridihrtdlpvrggvyrlsggreyhsydativsietdtgltgwgestpfgstyiaa
haggtraalellapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaaglp
lcdmtggrvagpvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpaldae
ritacladrqpgewyladanngltvehalrmlsllppgldivleapcaswaetkslrarc
alpllldeliqtetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvqdt
vgsqisfaailhlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglglrv
nrdalgtpvktfg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3fv9F (F:)
mslkitridihrtdlpvrggvyrlsggreyhsydativsietdtgltgwgestpfgstyi
aahaggtraalellapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaag
lplcdmtggrvagpvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpald
aeritacladrqpgewyladanngltvehalrmlsllppgldivleapcaswaetkslra
rcalpllldeliqtetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvq
dtvgsqisfaailhlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglgl
rvnrdalgtpvktfgdpieghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fv9F (F:)
lkitridihrtdlpvrggvyrlsggreyhsydativsietdtgltgwgestpfgstyiaa
haggtraalellapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaaglp
lcdmtggrvagpvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpaldae
ritacladrqpgewyladanngltvehalrmlsllppgldivleapcaswaetkslrarc
alpllldeliqtetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvqdt
vgsqisfaailhlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglglrv
nrdalgtpvktfg

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3fv9G (G:)
mslkitridihrtdlpvrggvyrlsggreyhsydativsietdtgltgwgestpfgstyi
aahaggtraalellapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaag
lplcdmtggrvagpvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpald
aeritacladrqpgewyladanngltvehalrmlsllppgldivleapcaswaetkslra
rcalpllldeliqtetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvq
dtvgsqisfaailhlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglgl
rvnrdalgtpvktfgdpieghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fv9G (G:)
lkitridihrtdlpvrggvyrlsggreyhsydativsietdtgltgwgestpfgstyiaa
haggtraalellapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaaglp
lcdmtggrvagpvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpaldae
ritacladrqpgewyladanngltvehalrmlsllppgldivleapcaswaetkslrarc
alpllldeliqtetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvqdt
vgsqisfaailhlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglglrv
nrdalgtpvktfg

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3fv9H (H:)
mslkitridihrtdlpvrggvyrlsggreyhsydativsietdtgltgwgestpfgstyi
aahaggtraalellapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaag
lplcdmtggrvagpvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpald
aeritacladrqpgewyladanngltvehalrmlsllppgldivleapcaswaetkslra
rcalpllldeliqtetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvq
dtvgsqisfaailhlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglgl
rvnrdalgtpvktfgdpieghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fv9H (H:)
lkitridihrtdlpvrggvyrlsggreyhsydativsietdtgltgwgestpfgstyiaa
haggtraalellapailgmdprqhdriwdrmrdtlkghrdaraaldiacwdiaaqaaglp
lcdmtggrvagpvpvissiggdtpeamrakvarhraqgfkghsikigaseaeggpaldae
ritacladrqpgewyladanngltvehalrmlsllppgldivleapcaswaetkslrarc
alpllldeliqtetdliaairddlcdgvglkvskqggitpmlrqraiaaaagmvmsvqdt
vgsqisfaailhlaqstprhllrcaldtramttaelaeidaplrdggasapsdpglglrv
nrdalgtpvktfgd