PDB entry 3fqd

View 3fqd on RCSB PDB site
Description: crystal structure of the s. pombe rat1-rai1 complex
Deposited on 2009-01-07, released 2009-02-03
The last revision was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5'-3' exoribonuclease 2
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Gene: dhp1, Rat1, SPAC26A3.12c
    Database cross-references and differences (RAF-indexed):
    • Uniprot P40848 (3-End)
      • expression tag (1)
      • expression tag (1)
  • Chain 'B':
    Compound: Protein din1
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Gene: din1, Rai1, SPAC19D5.06c
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3fqdA (A:)
masmgvpalfrllsrkfakvitpvieapteklpdgteiepdlslpnpngvecdnlyldmn
givhpcshpedrpapetedemmvavfeytdrilamvrprqllfiaidgvaprakmnqqrs
rrfrssreaalkeeelqafieeakqqgipidenatkkkswdsncitpgtpfmdtlakslr
yyiinklnsdpcwrnvrfilsdasvpgegehkimefirsqrvkpeydpnthhvvygldad
limlglathephfrvlredvffqqgstkktkeerlgikrlddvsetnkvpvkkpfiwlnv
silreylevelyvpnlpfpfdleraiddwvffiffvgndflphlpsldirdgaverltei
wraslphmggyltldgsvnlaraevilsavgnqeddifkrlkqqedrrnenyrrrqqres
nqesesyvdnvviqrsvetqstevvtsskstsvdtkppkktqkidapapvdlvnlsekts
nrslgatnrelinnraanrlglsreaaavssvnklaasalkaqlvsnetlqnvpledsia
sssayedtdsiesstpvvhpidtkvsnvgqkrkapdsteenentdtvrlyepgyreryye
qkfhispdepekireavkhyvhglcwvllyyyqgcpswtwyypyhyapfaadfkdlasid
vkfelnqpfkpyeqllgvlpaasknnlpeklqtlmtdenseiidfypenftidlngkkfe
wqgvallpfidenrllnavskiypqlteeeskrnedgstllfisehhpmfselvkqlysk
krqgkplklsgkmahglfgkvntndsvipnvsvqcpidvtsadalqkygsiddnqsislv
fevpkshfvhksmllrgvkmpnrvltpedinqvraersfssrrnngnsaaalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >3fqdA (A:)
asmgvpalfrllsrkfakvitpvieapteklpdgteiepdlslpnpngvecdnlyldmng
ivhpcshpedrpapetedemmvavfeytdrilamvrprqllfiaidgvaprakmnqqrsr
rfrssreaalkeeelqafieeakqqgipidenatkkkswdsncitpgtpfmdtlakslry
yiinklnsdpcwrnvrfilsdasvpgegehkimefirsqrvkpeydpnthhvvygldadl
imlglathephfrvlredvfkeerlgikrlddkpfiwlnvsilreylevelyvpnlpfpf
dleraiddwvffiffvgndflphlpsldirdgaverlteiwraslphmggyltldgsvnl
araevilsavgnqeddifkrlkqqedrrndtvrlyepgyreryyeqkfhispdepekire
avkhyvhglcwvllyyyqgcpswtwyypyhyapfaadfkdlasidvkfelnqpfkpyeql
lgvlpaasknnlpeklqtlmtdenseiidfypenftidlngkkfewqgvallpfidenrl
lnavskiypqlteeeskrnedgstllfisehhpmfselvkqlyskkrqgkplklsgkmah
glfgkvntndsvipnvsvqcpidvtsadalqkygsiddnqsislvfevpkshfvhksmll
rgvkmpnrvltpedinqvraer

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3fqdB (B:)
mlrefsfydvppahvppvsepleiacyslsrdrelllddsklsyyyppplfsdlntgfpn
rfhppksdpdpisivkdvlmtkgiqmnssfltwrglitkimcapldprnhwetylvmdpt
sgiimmeertrsetsyanqdrmcywgykfeaistlpeiwdacsrdqieqrdnqdvvpdeq
ycsivkinigksklilagevdciwdkkpcsakesdvhsddgtieedasnaenpnlhyvel
ktskkyplenygmrkkllkywaqsfllgigriiigfrddngiliemkelfthqipkmlrp
yfkpndwtpnrllvvlehalewikqtvkqhppsteftlsytggsklvlrqii

    Sequence, based on observed residues (ATOM records):
    >3fqdB (B:)
mlrefsfydvppahvppvsepleiacyslsrdrelllddsklsyyyppplfsdlntgfpn
rfhppksdpdpisivkdvlmtkgiqmnssfltwrglitkimcapldprnhwetylvmdpt
sgiimmeertrsetsyanqdrmcywgykfeaistlpeiwdacsrdqieqrdnqdvvpdeq
ycsivkinigksklilagevdciwdkkpcsenpnlhyvelktskkyplenygmrkkllky
waqsfllgigriiigfrddngiliemkelfthqipkmlrpyfkpndwtpnrllvvlehal
ewikqtvkqhppsteftlsytggsklvlrqii