PDB entry 3fma

View 3fma on RCSB PDB site
Description: crystal structure of the gyf domain of smy2 in complex with a proline- rich peptide from bbp/scsf1
Deposited on 2008-12-19, released 2009-12-22
The last revision was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein SMY2
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SMY2
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Protein SMY2
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SMY2
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Protein SMY2
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SMY2
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Protein SMY2
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SMY2
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Protein SMY2
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SMY2
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Branchpoint-bridging protein
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: Branchpoint-bridging protein
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: Branchpoint-bridging protein
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: Branchpoint-bridging protein
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: Branchpoint-bridging protein
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3fmaA (A:)
gsngmsqlpapvsvesswryidtqgqihgpfttqmmsqwyiggyfastlqisrlgstpet
lgindifitlgelmtklekydtdpfttfdklhvqttssds

    Sequence, based on observed residues (ATOM records):
    >3fmaA (A:)
svesswryidtqgqihgpfttqmmsqwyiggyfastlqisrlgstpetlgindifitlge
lmtklekydtdpfttfdklhv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3fmaB (B:)
gsngmsqlpapvsvesswryidtqgqihgpfttqmmsqwyiggyfastlqisrlgstpet
lgindifitlgelmtklekydtdpfttfdklhvqttssds

    Sequence, based on observed residues (ATOM records):
    >3fmaB (B:)
svesswryidtqgqihgpfttqmmsqwyiggyfastlqisrlgstpetlgindifitlge
lmtklekydtdpfttfdklhvqtt

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3fmaC (C:)
gsngmsqlpapvsvesswryidtqgqihgpfttqmmsqwyiggyfastlqisrlgstpet
lgindifitlgelmtklekydtdpfttfdklhvqttssds

    Sequence, based on observed residues (ATOM records):
    >3fmaC (C:)
pvsvesswryidtqgqihgpfttqmmsqwyiggyfastlqisrlgstpetlgindifitl
gelmtklekydtdpfttfdklhvqtt

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3fmaD (D:)
gsngmsqlpapvsvesswryidtqgqihgpfttqmmsqwyiggyfastlqisrlgstpet
lgindifitlgelmtklekydtdpfttfdklhvqttssds

    Sequence, based on observed residues (ATOM records):
    >3fmaD (D:)
vsvesswryidtqgqihgpfttqmmsqwyiggyfastlqisrlgstpetlgindifitlg
elmtklekydtdpfttfdklhvqtt

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3fmaE (E:)
gsngmsqlpapvsvesswryidtqgqihgpfttqmmsqwyiggyfastlqisrlgstpet
lgindifitlgelmtklekydtdpfttfdklhvqttssds

    Sequence, based on observed residues (ATOM records):
    >3fmaE (E:)
vsvesswryidtqgqihgpfttqmmsqwyiggyfastlqisrlgstpetlgindifitlg
elmtklekydtdpfttfdklhvqtt

  • Chain 'L':
    Sequence, based on SEQRES records:
    >3fmaL (L:)
ssiapppglsg

    Sequence, based on observed residues (ATOM records):
    >3fmaL (L:)
apppgls

  • Chain 'M':
    Sequence, based on SEQRES records:
    >3fmaM (M:)
ssiapppglsg

    Sequence, based on observed residues (ATOM records):
    >3fmaM (M:)
iapppgl

  • Chain 'N':
    Sequence, based on SEQRES records:
    >3fmaN (N:)
ssiapppglsg

    Sequence, based on observed residues (ATOM records):
    >3fmaN (N:)
apppgl

  • Chain 'O':
    Sequence, based on SEQRES records:
    >3fmaO (O:)
ssiapppglsg

    Sequence, based on observed residues (ATOM records):
    >3fmaO (O:)
apppgls

  • Chain 'P':
    Sequence, based on SEQRES records:
    >3fmaP (P:)
ssiapppglsg

    Sequence, based on observed residues (ATOM records):
    >3fmaP (P:)
apppgls