PDB entry 3fkh

View 3fkh on RCSB PDB site
Description: crystal structure of putative pyridoxamine 5'-phosphate oxidase (np_601736.1) from corynebacterium glutamicum atcc 13032 kitasato at 2.51 a resolution
Deposited on 2008-12-16, released 2009-01-13
The last revision was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: XRAY
Resolution: 2.51 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative pyridoxamine 5'-phosphate oxidase
    Species: Corynebacterium glutamicum ATCC 13032 [TaxId:196627]
    Gene: cg2794, NP_601736.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6M2U2 (1-End)
      • leader sequence (0)
  • Chain 'B':
    Compound: Putative pyridoxamine 5'-phosphate oxidase
    Species: Corynebacterium glutamicum ATCC 13032 [TaxId:196627]
    Gene: cg2794, NP_601736.1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Putative pyridoxamine 5'-phosphate oxidase
    Species: Corynebacterium glutamicum ATCC 13032 [TaxId:196627]
    Gene: cg2794, NP_601736.1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Putative pyridoxamine 5'-phosphate oxidase
    Species: Corynebacterium glutamicum ATCC 13032 [TaxId:196627]
    Gene: cg2794, NP_601736.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6M2U2 (1-End)
      • leader sequence (0)
  • Chain 'E':
    Compound: Putative pyridoxamine 5'-phosphate oxidase
    Species: Corynebacterium glutamicum ATCC 13032 [TaxId:196627]
    Gene: cg2794, NP_601736.1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Putative pyridoxamine 5'-phosphate oxidase
    Species: Corynebacterium glutamicum ATCC 13032 [TaxId:196627]
    Gene: cg2794, NP_601736.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6M2U2 (1-End)
      • leader sequence (0)
  • Heterogens: P33, CA, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3fkhA (A:)
gmdnpvnilneqealerlqsvslgrvvvrrsdemdifpvnfivdkgaiyirtaegnklfs
mnlnhdvlfeadevkdgkawsvvvrataeivrkldeiayadtlelkpwiptlkynyvriv
pneitgreftlgeepery

    Sequence, based on observed residues (ATOM records):
    >3fkhA (A:)
gmdnpvnilneqealerlqsvslgrvvvrrsdemdifpvnfivdkgaiyirtaelnhdvl
feadevkdgkawsvvvrataeivrkldeiayadtlelkpwiptlkynyvrivpneitgre
ftlge

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3fkhB (B:)
gmdnpvnilneqealerlqsvslgrvvvrrsdemdifpvnfivdkgaiyirtaegnklfs
mnlnhdvlfeadevkdgkawsvvvrataeivrkldeiayadtlelkpwiptlkynyvriv
pneitgreftlgeepery

    Sequence, based on observed residues (ATOM records):
    >3fkhB (B:)
mdnpvnilneqealerlqsvslgrvvvrrsdemdifpvnfivdkgaiyirtaegnklfsm
nlnhdvlfeadevkdgkawsvvvrataeivrkldeiayadtlelkpwiptlkynyvrivp
neitgreftlgee

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3fkhC (C:)
gmdnpvnilneqealerlqsvslgrvvvrrsdemdifpvnfivdkgaiyirtaegnklfs
mnlnhdvlfeadevkdgkawsvvvrataeivrkldeiayadtlelkpwiptlkynyvriv
pneitgreftlgeepery

    Sequence, based on observed residues (ATOM records):
    >3fkhC (C:)
pvnilneqealerlqsvslgrvvvrrsdemdifpvnfivdkgaiyirtaegnklfsmnln
hdvlfeadevkdgkawsvvvrataeivrkldeiayadtlelkpwiptlkynyvrivpnei
tgreftl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3fkhD (D:)
gmdnpvnilneqealerlqsvslgrvvvrrsdemdifpvnfivdkgaiyirtaegnklfs
mnlnhdvlfeadevkdgkawsvvvrataeivrkldeiayadtlelkpwiptlkynyvriv
pneitgreftlgeepery

    Sequence, based on observed residues (ATOM records):
    >3fkhD (D:)
gmdnpvnilneqealerlqsvslgrvvvrrsdemdifpvnfivdkgaiyirtaegnklfs
mnlnhdvlfeadevkdgkawsvvvrataeivrkldeiayadtlelkpwiptlkynyvriv
pneitgreftlgee

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3fkhE (E:)
gmdnpvnilneqealerlqsvslgrvvvrrsdemdifpvnfivdkgaiyirtaegnklfs
mnlnhdvlfeadevkdgkawsvvvrataeivrkldeiayadtlelkpwiptlkynyvriv
pneitgreftlgeepery

    Sequence, based on observed residues (ATOM records):
    >3fkhE (E:)
vnilneqealerlqsvslgrvvvrrsdemdifpvnfivdkgaiyirtaegnklfsmnlnh
dvlfeadevkdgkawsvvvrataeivrkldeiayadtlelkpwiptlkynyvrivpneit
greftl

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3fkhF (F:)
gmdnpvnilneqealerlqsvslgrvvvrrsdemdifpvnfivdkgaiyirtaegnklfs
mnlnhdvlfeadevkdgkawsvvvrataeivrkldeiayadtlelkpwiptlkynyvriv
pneitgreftlgeepery

    Sequence, based on observed residues (ATOM records):
    >3fkhF (F:)
gmdnpvnilneqealerlqsvslgrvvvrrsdemdifpvnfivdkgaiyirtaegnklfs
mnlnhdvlfeadevkdgkawsvvvrataeivrkldeiayadtlelklkynyvrivpneit
greftlge