PDB entry 3fka

View 3fka on RCSB PDB site
Description: crystal structure of a ntf-2 like protein of unknown function (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution
Deposited on 2008-12-16, released 2009-02-24
The last revision was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: XRAY
Resolution: 1.69 Å
R-factor: N/A
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: uncharacterized NTF-2 like protein
    Species: Silicibacter pomeroyi DSS-3 [TaxId:246200]
    Gene: SPO1084, YP_166335.1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: uncharacterized NTF-2 like protein
    Species: Silicibacter pomeroyi DSS-3 [TaxId:246200]
    Gene: SPO1084, YP_166335.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5LUH0 (1-119)
      • leader sequence (0)
  • Chain 'C':
    Compound: uncharacterized NTF-2 like protein
    Species: Silicibacter pomeroyi DSS-3 [TaxId:246200]
    Gene: SPO1084, YP_166335.1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: uncharacterized NTF-2 like protein
    Species: Silicibacter pomeroyi DSS-3 [TaxId:246200]
    Gene: SPO1084, YP_166335.1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: UNL, ACT, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3fkaA (A:)
gmttsehiaaltalvetyvmamtrgdrpaleriffgkasevghyegellwnsrdafiamc
edaadaetdpfwaissvsvqgdiamlhvendwagmrfddfltvllhegswrivskvyrir

    Sequence, based on observed residues (ATOM records):
    >3fkaA (A:)
mttsehiaaltalvetyvmamtrgdrpaleriffgkasevghyegellwnsrdafiamce
daadaetdpfwaissvsvqgdiamlhvendwagmrfddfltvllhegswrivskvyrir

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >3fkaB (B:)
gmttsehiaaltalvetyvmamtrgdrpaleriffgkasevghyegellwnsrdafiamc
edaadaetdpfwaissvsvqgdiamlhvendwagmrfddfltvllhegswrivskvyrir

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3fkaC (C:)
gmttsehiaaltalvetyvmamtrgdrpaleriffgkasevghyegellwnsrdafiamc
edaadaetdpfwaissvsvqgdiamlhvendwagmrfddfltvllhegswrivskvyrir

    Sequence, based on observed residues (ATOM records):
    >3fkaC (C:)
mttsehiaaltalvetyvmamtrgdrpaleriffgkasevghyegellwnsrdafiamce
daadaetdpfwaissvsvqgdiamlhvendwagmrfddfltvllhegswrivskvyrir

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3fkaD (D:)
gmttsehiaaltalvetyvmamtrgdrpaleriffgkasevghyegellwnsrdafiamc
edaadaetdpfwaissvsvqgdiamlhvendwagmrfddfltvllhegswrivskvyrir

    Sequence, based on observed residues (ATOM records):
    >3fkaD (D:)
mttsehiaaltalvetyvmamtrgdrpaleriffgkasevghyegellwnsrdafiamce
daadaetdpfwaissvsvqgdiamlhvendwagmrfddfltvllhegswrivskvyrir