PDB entry 3fd4
View 3fd4 on RCSB PDB site
Description: Crystal Structure of Epstein-Barr virus gp42 protein
Class: viral protein
Keywords: C type lectin, herpesvirus, Virus entry, membrane fusion, Host-virus interaction, Lectin, Membrane, Transmembrane, VIRAL PROTEIN
Deposited on
2008-11-24, released
2009-06-23
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-11-01, with a file datestamp of
2017-10-27.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Glycoprotein gp42
Species: Human herpesvirus 4 (strain B95-8) [TaxId:10377]
Gene: BZLF2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3fd4a_ - Chain 'B':
Compound: Glycoprotein gp42
Species: Human herpesvirus 4 (strain B95-8) [TaxId:10377]
Gene: BZLF2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3fd4b_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3fd4A (A:)
gggrvaaaaitwvpkpnvevwpvdppppvnfnktaeqeygdkevklphwtptlhtfqvpq
nytkanctycntreytfsykgccfyftkkkhtwngcfqacaelypctyfygptpdilpvv
trnlnaieslwvgvyrvgegnwtsldggtfkvyqifgshctyvskfstvpvshhecsflk
pclcvsqrsns
Sequence, based on observed residues (ATOM records): (download)
>3fd4A (A:)
ptlhtfqvpqnytkanctycntreytfsykgccfyftkkkhtwngcfqacaelypctyfy
gptpdilpvvtrnlnaieslwvgvyrvgegnwtsldggtfkvyqifgshctyvskfstvp
vshhecsflkpclcvsqrsn
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3fd4B (B:)
gggrvaaaaitwvpkpnvevwpvdppppvnfnktaeqeygdkevklphwtptlhtfqvpq
nytkanctycntreytfsykgccfyftkkkhtwngcfqacaelypctyfygptpdilpvv
trnlnaieslwvgvyrvgegnwtsldggtfkvyqifgshctyvskfstvpvshhecsflk
pclcvsqrsns
Sequence, based on observed residues (ATOM records): (download)
>3fd4B (B:)
vklphwtptlhtfqvpqnytkanctycntreytfsykgccfyftkkkhtwngcfqacael
ypctyfygptpdilpvvtrnlnaieslwvgvyrvgegnwtsldggtfkvyqifgshctyv
skfstvpvshhecsflkpclcvsqrsn