PDB entry 3fd2

View 3fd2 on RCSB PDB site
Description: Crystal structure of mMsoI/DNA complex with calcium
Class: hydrolase/DNA
Keywords: Protein-DNA complex, Chloroplast, HYDROLASE-DNA COMPLEX
Deposited on 2008-11-24, released 2009-06-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-06-28, with a file datestamp of 2017-06-23.
Experiment type: XRAY
Resolution: 2.69 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Site-specific DNA endonuclease I-MsoI
    Species: Monomastix sp. OKE-1, unidentified [TaxId:141716]
    Gene: the chloroplast large subunit rDNA intron gene
    Database cross-references and differences (RAF-indexed):
    • Uniprot C0JWR6 (Start-169)
    • PDB 3FD2 (170-End)
    Domains in SCOPe 2.08: d3fd2a1, d3fd2a2
  • Chain 'B':
    Compound: 5'-d(*gp*cp*ap*gp*ap*ap*cp*gp*tp*cp*gp*tp*gp*ap*gp*ap*cp*ap*gp*tp*tp*cp*cp*g)-3'
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: 5'-d(*cp*gp*gp*ap*ap*cp*tp*gp*tp*cp*tp*cp*ap*cp*gp*ap*cp*gp*tp*tp*cp*tp*gp*c)-3'
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3fd2A (A:)
mttkntlqpteaayiagfldgdgsiyakliprpdykdikyqvslaisfiqrkdkfpylqd
iydqlgkrgnlrkdrgdgiadytiigsthlsiilpdlvpylrikkkqanrilhiinlypq
aqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagkiessptgsgsgskhp
tltlptttsqenlpngsgsgsgtmttkntlqpteaayiagfldgdgsiyakliprpdykd
ikyqvslaisfiqrkdkfpylqdiydqlgkrgnlrkdrgdgiadytiigsthlsiilpdl
vpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrll
eeflkagkiessp

    Sequence, based on observed residues (ATOM records): (download) 
    >3fd2A (A:)
ntlqpteaayiagfldgdgsiyakliprpdykdikyqvslaisfiqrkdkfpylqdiydq
lgkrgnlrkdrgdgiadytiigsthlsiilpdlvpylrikkkqanrilhiinlypqaqkn
pskfldlvkivddvqnlnkradelkstnydrlleeflkagkiessptgsgsgskkntlqp
teaayiagfldgdgsiyakliprpdykdikyqvslaisfiqrkdkfpylqdiydqlgkrg
nlrkdrgdgiadytiigsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfl
dlvkivddvqnlnkradelkstnydrlleeflkagkie

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.