PDB entry 3fby

View 3fby on RCSB PDB site
Description: the crystal structure of the signature domain of cartilage oligomeric matrix protein.
Deposited on 2008-11-20, released 2009-06-23
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 3.15 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cartilage oligomeric matrix protein
    Species: Homo sapiens [TaxId:9606]
    Gene: COMP, COMP(cartilage oligomeric matrix protein)
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49747 (16-548)
      • expression tag (14-15)
  • Chain 'B':
    Compound: cartilage oligomeric matrix protein
    Species: Homo sapiens [TaxId:9606]
    Gene: COMP, COMP(cartilage oligomeric matrix protein)
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49747 (16-548)
      • expression tag (14-15)
  • Chain 'C':
    Compound: cartilage oligomeric matrix protein
    Species: Homo sapiens [TaxId:9606]
    Gene: COMP, COMP(cartilage oligomeric matrix protein)
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49747 (16-548)
      • expression tag (14-15)
  • Heterogens: CA, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3fbyA (A:)
rspwpgvptspvwwnsaqrfcpdgspsechehadcvlerdgsrscvcavgwagngilcgr
dtdldgfpdeklrcperqcrkdncvtvpnsgqedvdrdgigdacdpdadgdgvpnekdnc
plvrnpdqrntdedkwgdacdncrsqknddqkdtdqdgrgdacdddidgdrirnqadncp
rvpnsdqkdsdgdgigdacdncpqksnpdqadvdhdfvgdacdsdqdqdgdghqdsrdnc
ptvpnsaqedsdhdgqgdacdddddndgvpdsrdncrlvpnpgqedadrdgvgdvcqddf
dadkvvdkidvcpenaevtltdfrafqtvvldpegdaqidpnwvvlnqgreivqtmnsdp
glavgytafngvdfegtfhvntvtdddyagfifgyqdsssfyvvmwkqmeqtywqanpfr
avaepgiqlkavksstgpgeqlrnalwhtgdtesqvrllwkdprnvgwkdkksyrwflqh
rpqvgyirvrfyegpelvadsnvvldttmrggrlgvfcfsqeniiwanlryrcndtiped
yethqlrqagt

    Sequence, based on observed residues (ATOM records):
    >3fbyA (A:)
nsaqrfcpdgspsechehadcvlerdgsrscvcavgwagngilcgrdtdldgfpdeklrc
perqcrkdncvtvpnsgqedvdrdgigdacdpdadgdgvpnekdncplvrnpdqrntded
kwgdacdncrsqknddqkdtdqdgrgdacdddidgdrirnqadncprvpnsdqkdsdgdg
igdacdncpqksnpdqadvdhdfvgdacdsdqdqdgdghqdsrdncptvpnsaqedsdhd
gqgdacdddddndgvpdsrdncrlvpnpgqedadrdgvgdvcqddfdadkvvdkidvcpe
naevtltdfrafqtvvldpegdaqidpnwvvlnqgreivqtmnsdpglavgytafngvdf
egtfhvntvtdddyagfifgyqdsssfyvvmwkqmeqtywqanpfravaepgiqlkavks
stgpgeqlrnalwhtgdtesqvrllwkdprnvgwkdkksyrwflqhrpqvgyirvrfyeg
pelvadsnvvldttmrggrlgvfcfsqeniiwanlryrcndtipedyethqlrqa

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3fbyB (B:)
rspwpgvptspvwwnsaqrfcpdgspsechehadcvlerdgsrscvcavgwagngilcgr
dtdldgfpdeklrcperqcrkdncvtvpnsgqedvdrdgigdacdpdadgdgvpnekdnc
plvrnpdqrntdedkwgdacdncrsqknddqkdtdqdgrgdacdddidgdrirnqadncp
rvpnsdqkdsdgdgigdacdncpqksnpdqadvdhdfvgdacdsdqdqdgdghqdsrdnc
ptvpnsaqedsdhdgqgdacdddddndgvpdsrdncrlvpnpgqedadrdgvgdvcqddf
dadkvvdkidvcpenaevtltdfrafqtvvldpegdaqidpnwvvlnqgreivqtmnsdp
glavgytafngvdfegtfhvntvtdddyagfifgyqdsssfyvvmwkqmeqtywqanpfr
avaepgiqlkavksstgpgeqlrnalwhtgdtesqvrllwkdprnvgwkdkksyrwflqh
rpqvgyirvrfyegpelvadsnvvldttmrggrlgvfcfsqeniiwanlryrcndtiped
yethqlrqagt

    Sequence, based on observed residues (ATOM records):
    >3fbyB (B:)
nsaqrfcpdgspsechehadcvlerdgsrscvcavgwagngilcgrdtdldgfpdeklrc
perqcrkdncvtvpnsgqedvdrdgigdacdpdadgdgvpnekdncplvrnpdqrntded
kwgdacdncrsqknddqkdtdqdgrgdacdddidgdrirnqadncprvpnsdqkdsdgdg
igdacdncpqksnpdqadvdhdfvgdacdsdqdqdgdghqdsrdncptvpnsaqedsdhd
gqgdacdddddndgvpdsrdncrlvpnpgqedadrdgvgdvcqddfdadkvvdkidvcpe
naevtltdfrafqtvvldpegdaqidpnwvvlnqgreivqtmnsdpglavgytafngvdf
egtfhvntvtdddyagfifgyqdsssfyvvmwkqmeqtywqanpfravaepgiqlkavks
stgpgeqlrnalwhtgdtesqvrllwkdprnvgwkdkksyrwflqhrpqvgyirvrfyeg
pelvadsnvvldttmrggrlgvfcfsqeniiwanlryrcndtipedyethqlrqa

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3fbyC (C:)
rspwpgvptspvwwnsaqrfcpdgspsechehadcvlerdgsrscvcavgwagngilcgr
dtdldgfpdeklrcperqcrkdncvtvpnsgqedvdrdgigdacdpdadgdgvpnekdnc
plvrnpdqrntdedkwgdacdncrsqknddqkdtdqdgrgdacdddidgdrirnqadncp
rvpnsdqkdsdgdgigdacdncpqksnpdqadvdhdfvgdacdsdqdqdgdghqdsrdnc
ptvpnsaqedsdhdgqgdacdddddndgvpdsrdncrlvpnpgqedadrdgvgdvcqddf
dadkvvdkidvcpenaevtltdfrafqtvvldpegdaqidpnwvvlnqgreivqtmnsdp
glavgytafngvdfegtfhvntvtdddyagfifgyqdsssfyvvmwkqmeqtywqanpfr
avaepgiqlkavksstgpgeqlrnalwhtgdtesqvrllwkdprnvgwkdkksyrwflqh
rpqvgyirvrfyegpelvadsnvvldttmrggrlgvfcfsqeniiwanlryrcndtiped
yethqlrqagt

    Sequence, based on observed residues (ATOM records):
    >3fbyC (C:)
nsaqrfcpdgspsechehadcvlerdgsrscvcavgwagngilcgrdtdldgfpdeklrc
perqcrkdncvtvpnsgqedvdrdgigdacdpdadgdgvpnekdncplvrnpdqrntded
kwgdacdncrsqknddqkdtdqdgrgdacdddidgdrirnqadncprvpnsdqkdsdgdg
igdacdncpqksnpdqadvdhdfvgdacdsdqdqdgdghqdsrdncptvpnsaqedsdhd
gqgdacdddddndgvpdsrdncrlvpnpgqedadrdgvgdvcqddfdadkvvdkidvcpe
naevtltdfrafqtvvldpegdaqidpnwvvlnqgreivqtmnsdpglavgytafngvdf
egtfhvntvtdddyagfifgyqdsssfyvvmwkqmeqtywqanpfravaepgiqlkavks
stgpgeqlrnalwhtgdtesqvrllwkdprnvgwkdkksyrwflqhrpqvgyirvrfyeg
pelvadsnvvldttmrggrlgvfcfsqeniiwanlryrcndtipedyethqlrqa