PDB entry 3fa3

View 3fa3 on RCSB PDB site
Description: Crystal structure of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member, trigonal crystal form
Class: lyase
Keywords: alpha/beta barrel, HELIX SWAPPING, LYASE
Deposited on 2008-11-14, released 2009-01-27
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.193
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3a_
  • Chain 'B':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3b_
  • Chain 'C':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3c_
  • Chain 'D':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3d_
  • Chain 'E':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3e_
  • Chain 'F':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3f_
  • Chain 'G':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3g_
  • Chain 'H':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3h_
  • Chain 'I':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3i_
  • Chain 'J':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3j_
  • Chain 'K':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3k_
  • Chain 'L':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3l_
  • Chain 'M':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3m_
  • Chain 'N':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3n_
  • Chain 'O':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3o_
  • Chain 'P':
    Compound: 2,3-dimethylmalate lyase
    Species: Aspergillus niger [TaxId:5061]
    Gene: An07g08390
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fa3p_
  • Heterogens: MN, OAF, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3fa3A (A:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3fa3A (A:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    l
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3fa3B (B:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3fa3C (C:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3fa3C (C:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    l
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3fa3D (D:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3fa3D (D:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    l
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3fa3E (E:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3fa3E (E:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    l
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3fa3F (F:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3fa3F (F:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    l
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3fa3G (G:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3fa3G (G:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    l
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3fa3H (H:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3fa3H (H:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    l
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >3fa3I (I:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3fa3I (I:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >3fa3J (J:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3fa3J (J:)
    mvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlgi
    ctlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqtk
    ilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraardagadvgfl
    egitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpfaalgpavaa
    mreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvdl
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >3fa3K (K:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3fa3K (K:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >3fa3L (L:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3fa3L (L:)
    mvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlgi
    ctlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqtk
    rcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraard
    agadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpfa
    algpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvdl
    

  • Chain 'M':
    Sequence, based on SEQRES records: (download)
    >3fa3M (M:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3fa3M (M:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    

  • Chain 'N':
    Sequence, based on SEQRES records: (download)
    >3fa3N (N:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3fa3N (N:)
    mvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlgi
    ctlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqtk
    ilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraardagadvgfl
    egitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpfaalgpavaa
    mreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvdl
    

  • Chain 'O':
    Sequence, based on SEQRES records: (download)
    >3fa3O (O:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3fa3O (O:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    l
    

  • Chain 'P':
    Sequence, based on SEQRES records: (download)
    >3fa3P (P:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    lk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3fa3P (P:)
    pmvtaatslrralenpdsfivapgvydglsarvalsagfdalymtgagtaasvhgqadlg
    ictlndmranaemisnispstpviadadtgyggpimvartteqysrsgvaafhiedqvqt
    krcghlagkilvdtdtyvtriraavqarqrigsdivviartdslqthgyeesvarlraar
    dagadvgflegitsremarqviqdlagwplllnmvehgatpsisaaeakemgfriiifpf
    aalgpavaamreameklkrdgipgldkemtpqmlfrvcgldesmkvdaqaggaafdggvd
    l