PDB entry 3f8l

View 3f8l on RCSB PDB site
Description: Crystal Structure of the Effector Domain of PhnF from Mycobacterium smegmatis
Class: transcription
Keywords: PhnF, GntR, HutC, transcription, regulator, UTRA, DNA-binding, Transcription regulation
Deposited on 2008-11-12, released 2009-11-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.182
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HTH-type transcriptional repressor phnF
    Species: Mycobacterium smegmatis [TaxId:246196]
    Gene: MSMEG_0650, phnF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3f8la_
  • Chain 'B':
    Compound: HTH-type transcriptional repressor phnF
    Species: Mycobacterium smegmatis [TaxId:246196]
    Gene: MSMEG_0650, phnF
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QQ72 (32-200)
      • expression tag (31)
  • Chain 'C':
    Compound: HTH-type transcriptional repressor phnF
    Species: Mycobacterium smegmatis [TaxId:246196]
    Gene: MSMEG_0650, phnF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3f8lc_
  • Chain 'D':
    Compound: HTH-type transcriptional repressor phnF
    Species: Mycobacterium smegmatis [TaxId:246196]
    Gene: MSMEG_0650, phnF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3f8ld_
  • Heterogens: SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3f8lA (A:)
msyyhhhhhhlestslykkagfenlyfqgsgairqplgmgsyteaakaqglsagrilvaw
sdltadevlagvlgvdvgapvlqlervlttdgvrvglettklpaqrypglretfdheasl
yaeirsrgiaftrtvdtidtalpdareaallgadartpmfllnrvsydqddvaieqrrsl
yrgdrmtftavmhaknsaivs

    Sequence, based on observed residues (ATOM records): (download) 
    >3f8lA (A:)
irqplgmgsyteaakaqglsagrilvawsdltadevlagvlgvdvgapvlqlervlttdg
vrvglettklpaqrypglretfdheaslyaeirsrgiaftrtvdtidtalpdareaallg
adartpmfllnrvsydqddvaieqrrslyrgdrmtftavmha

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3f8lC (C:)
msyyhhhhhhlestslykkagfenlyfqgsgairqplgmgsyteaakaqglsagrilvaw
sdltadevlagvlgvdvgapvlqlervlttdgvrvglettklpaqrypglretfdheasl
yaeirsrgiaftrtvdtidtalpdareaallgadartpmfllnrvsydqddvaieqrrsl
yrgdrmtftavmhaknsaivs

    Sequence, based on observed residues (ATOM records): (download) 
    >3f8lC (C:)
irqplgmgsyteaakaqglsagrilvawsdltadevlagvlgvdvgapvlqlervlttdg
vrvglettklpaqrypglretfdheaslyaeirsrgiaftrtvdtidtalpdareaallg
adartpmfllnrvsydqddvaieqrrslyrgdrmtftavmha

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3f8lD (D:)
msyyhhhhhhlestslykkagfenlyfqgsgairqplgmgsyteaakaqglsagrilvaw
sdltadevlagvlgvdvgapvlqlervlttdgvrvglettklpaqrypglretfdheasl
yaeirsrgiaftrtvdtidtalpdareaallgadartpmfllnrvsydqddvaieqrrsl
yrgdrmtftavmhaknsaivs

    Sequence, based on observed residues (ATOM records): (download) 
    >3f8lD (D:)
irqplgmgsyteaakaqglsagrilvawsdltadevlagvlgvdvgapvlqlervlttdg
vrvglettklpaqrypglretfdheaslyaeirsrgiaftrtvdtidtalpdareaallg
adartpmfllnrvsydqddvaieqrrslyrgdrmtftavmha