PDB entry 3f4f

View 3f4f on RCSB PDB site
Description: Crystal structure of dUT1p, a dUTPase from Saccharomyces cerevisiae
Class: hydrolase
Keywords: trimer, beta barrel, ump, product complex, dUTP pyrophosphatase, dITP, Hydrolase, Nucleotide metabolism, Phosphoprotein
Deposited on 2008-10-31, released 2008-11-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-10-10, with a file datestamp of 2012-10-05.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.149
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: deoxyuridine 5'-triphosphate nucleotidohydrolase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: DUT1, YBR252W, YBR1705
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3f4fa_
  • Chain 'B':
    Compound: deoxyuridine 5'-triphosphate nucleotidohydrolase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: DUT1, YBR252W, YBR1705
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3f4fb_
  • Chain 'C':
    Compound: deoxyuridine 5'-triphosphate nucleotidohydrolase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: DUT1, YBR252W, YBR1705
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3f4fc_
  • Heterogens: UMP, NA, EDO, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3f4fA (A:)
mgsshhhhhhssglvprgshmtatsdkvlkiqlrsasatvptkgsataagydiyasqdit
ipamgqgmvstdisftvpvgtygriaprsglavkngiqtgagvvdrdytgevkvvlfnhs
qrdfaikkgdrvaqlilekivddaqivvvdsleesargaggfgstgn

    Sequence, based on observed residues (ATOM records): (download) 
    >3f4fA (A:)
dkvlkiqlrsasatvptkgsataagydiyasqditipamgqgmvstdisftvpvgtygri
aprsglavkngiqtgagvvdrdytgevkvvlfnhsqrdfaikkgdrvaqlilekivddaq
ivvvdsleesargaggfg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3f4fB (B:)
mgsshhhhhhssglvprgshmtatsdkvlkiqlrsasatvptkgsataagydiyasqdit
ipamgqgmvstdisftvpvgtygriaprsglavkngiqtgagvvdrdytgevkvvlfnhs
qrdfaikkgdrvaqlilekivddaqivvvdsleesargaggfgstgn

    Sequence, based on observed residues (ATOM records): (download) 
    >3f4fB (B:)
dkvlkiqlrsasatvptkgsataagydiyasqditipamgqgmvstdisftvpvgtygri
aprsglavkngiqtgagvvdrdytgevkvvlfnhsqrdfaikkgdrvaqlilekivddaq
ivvvdsleesargaggfg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3f4fC (C:)
mgsshhhhhhssglvprgshmtatsdkvlkiqlrsasatvptkgsataagydiyasqdit
ipamgqgmvstdisftvpvgtygriaprsglavkngiqtgagvvdrdytgevkvvlfnhs
qrdfaikkgdrvaqlilekivddaqivvvdsleesargaggfgstgn

    Sequence, based on observed residues (ATOM records): (download) 
    >3f4fC (C:)
kvlkiqlrsasatvptkgsataagydiyasqditipamgqgmvstdisftvpvgtygria
prsglavkngiqtgagvvdrdytgevkvvlfnhsqrdfaikkgdrvaqlilekivddaqi
vvvdsleesargaggfg