PDB entry 3f3p

View 3f3p on RCSB PDB site
Description: crystal structure of the nucleoporin pair nup85-seh1, space group p21212
Deposited on 2008-10-31, released 2009-04-07
The last revision was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoporin SEH1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SEH1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Nucleoporin SEH1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SEH1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Nucleoporin NUP85
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NUP85, RAT9
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Nucleoporin NUP85
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NUP85, RAT9
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Nucleoporin SEH1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SEH1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Nucleoporin SEH1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SEH1
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Nucleoporin NUP85
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NUP85, RAT9
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Nucleoporin NUP85
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NUP85, RAT9
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Nucleoporin SEH1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SEH1
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Nucleoporin SEH1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SEH1
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Nucleoporin NUP85
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NUP85, RAT9
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Nucleoporin NUP85
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NUP85, RAT9
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3f3pA (A:)
phmqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssi
vaidwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfap
ahlglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrf
speklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdg
ririfkiteklsplaseesltnsnmfdnsadvdmdaqgrsdsnteekaelqsnlqvells
ehddhngevwsvswnltgtilssagddgkvrlwkatysnefkcmsvitaqq

    Sequence, based on observed residues (ATOM records):
    >3f3pA (A:)
mqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssiva
idwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfapah
lglklaclgndgilrlydalepsdlrswtltsemkvlsipqsdfclswcpsrfspeklav
saleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdgririfki
teksnlqvellsehddhngevwsvswnltgtilssagddgkvrlwkatysnefkcmsvit
aqq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3f3pB (B:)
phmqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssi
vaidwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfap
ahlglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrf
speklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdg
ririfkiteklsplaseesltnsnmfdnsadvdmdaqgrsdsnteekaelqsnlqvells
ehddhngevwsvswnltgtilssagddgkvrlwkatysnefkcmsvitaqq

    Sequence, based on observed residues (ATOM records):
    >3f3pB (B:)
mqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssiva
idwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfapah
lglklaclgndgilrlydalepsdlrswtltsemkvlsipqsdfclswcpsrfspeklav
saleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdgririfki
teksnlqvellsehddhngevwsvswnltgtilssagddgkvrlwkatysnefkcmsvit
aqq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3f3pC (C:)
mtiddsnrllmdvdqfdflddgtaqlsnnktdeeeqlykrdpvsgailvpmtvndqpiek
ngdkmplkfklgplsyqnmafitakdkyklypvriprldtskefsayvsglfeiyrdlgd
drvfnvptigvvnsnfakehnatvnlameailnelevfigrvkdqdgrvnrfyeleeslt
vlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyieqvfsvkdstagkkvf
etqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsiellkqypkdss
stfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqysrtwyesfcgf
llyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvmesldsctaaft
amiceakglienifegeknsddysnednemledlfsyrngmasymlnsfafelcslgdke
lwpvaiglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyt
tlgnqmlsahniiesianfsragkyelvks

    Sequence, based on observed residues (ATOM records):
    >3f3pC (C:)
krdpvsgailvpmtvndqpiekngdkmplkfklgplsyqnmafitakdkyklypvriprl
dtskefsayvsglfeiyrdlgddrvfnnsnfakehnatvnlameailnelevfigrvkdq
dgrvnrfyeleesltvlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyie
qvfsvkvfetqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsiell
kqypkdssstfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqysrt
wyesfcgfllyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvmesl
dsctaaftamiceakglienifeledlfsyrngmasymlnsfafelcslgdkelwpvaig
lialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyttlgnqml

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3f3pD (D:)
mtiddsnrllmdvdqfdflddgtaqlsnnktdeeeqlykrdpvsgailvpmtvndqpiek
ngdkmplkfklgplsyqnmafitakdkyklypvriprldtskefsayvsglfeiyrdlgd
drvfnvptigvvnsnfakehnatvnlameailnelevfigrvkdqdgrvnrfyeleeslt
vlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyieqvfsvkdstagkkvf
etqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsiellkqypkdss
stfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqysrtwyesfcgf
llyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvmesldsctaaft
amiceakglienifegeknsddysnednemledlfsyrngmasymlnsfafelcslgdke
lwpvaiglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyt
tlgnqmlsahniiesianfsragkyelvks

    Sequence, based on observed residues (ATOM records):
    >3f3pD (D:)
sgailvpmtvndqpiekngdkmplkfklgplsyqnmafitakdkyklypvriprldtske
fsayvsglfeiyrdlgddrvfnvsnfakehnatvnlameailnelevfigrvkdqdgrvn
rfyeleesltvlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyieqvfsk
vfetqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsiellkqypkd
ssstfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqysrtwyesfc
gfllyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvmesldsctaa
ftamiceakglienifemledlfsyrngmasymlnsfafelcslgdkelwpvaiglials
atgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyttlgnqmlsah

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3f3pE (E:)
phmqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssi
vaidwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfap
ahlglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrf
speklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdg
ririfkiteklsplaseesltnsnmfdnsadvdmdaqgrsdsnteekaelqsnlqvells
ehddhngevwsvswnltgtilssagddgkvrlwkatysnefkcmsvitaqq

    Sequence, based on observed residues (ATOM records):
    >3f3pE (E:)
mqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssiva
idwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfapah
lglklaclgndgilrlydalepsdlrswtltsemkvlsipqsdfclswcpsrfspeklav
saleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdgririfki
teksnlqvellsehddhngevwsvswnltgtilssagddgkvrlwkatysnefkcmsvit
aqq

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3f3pF (F:)
phmqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssi
vaidwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfap
ahlglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrf
speklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdg
ririfkiteklsplaseesltnsnmfdnsadvdmdaqgrsdsnteekaelqsnlqvells
ehddhngevwsvswnltgtilssagddgkvrlwkatysnefkcmsvitaqq

    Sequence, based on observed residues (ATOM records):
    >3f3pF (F:)
mqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssiva
idwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfapah
lglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrfsp
eklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdgri
rifkiteksnlqvellsehddhngevwsvswnltgtilssagddgkvrlwkatysnefkc
msvitaqq

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3f3pG (G:)
mtiddsnrllmdvdqfdflddgtaqlsnnktdeeeqlykrdpvsgailvpmtvndqpiek
ngdkmplkfklgplsyqnmafitakdkyklypvriprldtskefsayvsglfeiyrdlgd
drvfnvptigvvnsnfakehnatvnlameailnelevfigrvkdqdgrvnrfyeleeslt
vlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyieqvfsvkdstagkkvf
etqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsiellkqypkdss
stfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqysrtwyesfcgf
llyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvmesldsctaaft
amiceakglienifegeknsddysnednemledlfsyrngmasymlnsfafelcslgdke
lwpvaiglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyt
tlgnqmlsahniiesianfsragkyelvks

    Sequence, based on observed residues (ATOM records):
    >3f3pG (G:)
krdpvsgailvpmtvndqpiekngdkmplkfklgplsyqnmafitakdkyklypvriprl
dtskefsayvsglfeiyrdlgddrvfnnsnfakehnatvnlameailnelevfigrvkdq
dgrvnrfyeleesltvlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyie
qvfsvkvfetqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsiell
kqypkdssstfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqysrt
wyesfcgfllyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvmesl
dsctaaftamiceakglienifegeledlfsyrngmasymlnsfafelcslgdkelwpva
iglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyttlgnq
mls

  • Chain 'H':
    Sequence, based on SEQRES records:
    >3f3pH (H:)
mtiddsnrllmdvdqfdflddgtaqlsnnktdeeeqlykrdpvsgailvpmtvndqpiek
ngdkmplkfklgplsyqnmafitakdkyklypvriprldtskefsayvsglfeiyrdlgd
drvfnvptigvvnsnfakehnatvnlameailnelevfigrvkdqdgrvnrfyeleeslt
vlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyieqvfsvkdstagkkvf
etqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsiellkqypkdss
stfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqysrtwyesfcgf
llyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvmesldsctaaft
amiceakglienifegeknsddysnednemledlfsyrngmasymlnsfafelcslgdke
lwpvaiglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyt
tlgnqmlsahniiesianfsragkyelvks

    Sequence, based on observed residues (ATOM records):
    >3f3pH (H:)
krdpvsgailvpmtvndqpiekngdkmplkfklgplsyqnmafitakdkyklypvriprl
dtskefsayvsglfeiyrdlgddrvfnvnsnfakehnatvnlameailnelevfigrvkd
qdgrvnrfyeleesltvlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyi
eqvfsvgkkvfetqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsi
ellkqypkdssstfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqy
srtwyesfcgfllyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvm
esldsctaaftamiceakglienifegeledlfsyrngmasymlnsfafelcslgdkelw
pvaiglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyttl
gnqmls

  • Chain 'I':
    Sequence, based on SEQRES records:
    >3f3pI (I:)
phmqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssi
vaidwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfap
ahlglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrf
speklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdg
ririfkiteklsplaseesltnsnmfdnsadvdmdaqgrsdsnteekaelqsnlqvells
ehddhngevwsvswnltgtilssagddgkvrlwkatysnefkcmsvitaqq

    Sequence, based on observed residues (ATOM records):
    >3f3pI (I:)
mqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssiva
idwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfapah
lglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrfsp
eklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdgri
rifkiteksnlqvellsehddhngevwsvswnltgtilssagddgkvrlwkatysnefkc
msvitaq

  • Chain 'J':
    Sequence, based on SEQRES records:
    >3f3pJ (J:)
phmqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssi
vaidwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfap
ahlglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrf
speklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdg
ririfkiteklsplaseesltnsnmfdnsadvdmdaqgrsdsnteekaelqsnlqvells
ehddhngevwsvswnltgtilssagddgkvrlwkatysnefkcmsvitaqq

    Sequence, based on observed residues (ATOM records):
    >3f3pJ (J:)
mqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssiva
idwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfapah
lglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrfsp
eklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdgri
rifkiteksnlqvellsehddhngevwsvswnltgtilssagddgkvrlwkatysnefkc
msvitaqq

  • Chain 'K':
    Sequence, based on SEQRES records:
    >3f3pK (K:)
mtiddsnrllmdvdqfdflddgtaqlsnnktdeeeqlykrdpvsgailvpmtvndqpiek
ngdkmplkfklgplsyqnmafitakdkyklypvriprldtskefsayvsglfeiyrdlgd
drvfnvptigvvnsnfakehnatvnlameailnelevfigrvkdqdgrvnrfyeleeslt
vlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyieqvfsvkdstagkkvf
etqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsiellkqypkdss
stfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqysrtwyesfcgf
llyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvmesldsctaaft
amiceakglienifegeknsddysnednemledlfsyrngmasymlnsfafelcslgdke
lwpvaiglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyt
tlgnqmlsahniiesianfsragkyelvks

    Sequence, based on observed residues (ATOM records):
    >3f3pK (K:)
krdpvsgailvpmtvndqpiekngdkmplkfklgplsyqnmafitakdkyklypvriprl
dtskefsayvsglfeiyrdlgddrvfnvnsnfakehnatvnlameailnelevfigrvkd
qdgrvnrfyeleesltvlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyi
eqvfsvkkvfetqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsie
llkqypkdssstfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqys
rtwyesfcgfllyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvme
sldsctaaftamiceakglienifemledlfsyrngmasymlnsfafelcslgdkelwpv
aiglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyttlgn
qmlsahn

  • Chain 'L':
    Sequence, based on SEQRES records:
    >3f3pL (L:)
mtiddsnrllmdvdqfdflddgtaqlsnnktdeeeqlykrdpvsgailvpmtvndqpiek
ngdkmplkfklgplsyqnmafitakdkyklypvriprldtskefsayvsglfeiyrdlgd
drvfnvptigvvnsnfakehnatvnlameailnelevfigrvkdqdgrvnrfyeleeslt
vlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyieqvfsvkdstagkkvf
etqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsiellkqypkdss
stfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqysrtwyesfcgf
llyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvmesldsctaaft
amiceakglienifegeknsddysnednemledlfsyrngmasymlnsfafelcslgdke
lwpvaiglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyt
tlgnqmlsahniiesianfsragkyelvks

    Sequence, based on observed residues (ATOM records):
    >3f3pL (L:)
ykrdpvsgailvpmtvndqpiekngdkmplkfklgplsyqnmafitakdkyklypvripr
ldtskefsayvsglfeiyrdlgddrvfnvnsnfakehnatvnlameailnelevfigrvk
dqdgrvnrfyeleesltvlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeey
ieqvfsvkkvfetqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsi
ellkqypkdssstfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqy
srtwyesfcgfllyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvm
esldsctaaftamiceakglienifegledlfsyrngmasymlnsfafelcslgdkelwp
vaiglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyttlg
nq