PDB entry 3f3f

View 3f3f on RCSB PDB site
Description: Crystal structure of the nucleoporin pair Nup85-Seh1, space group P21
Deposited on 2008-10-30, released 2009-04-07
The last revision was dated 2010-09-29, with a file datestamp of 2010-09-24.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.246
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoporin SEH1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SEH1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P53011 (2-End)
      • expression tag (2)
      • expression tag (2)
  • Chain 'B':
    Compound: Nucleoporin SEH1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SEH1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P53011 (2-End)
      • expression tag (2)
      • expression tag (2)
  • Chain 'C':
    Compound: Nucleoporin NUP85
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NUP85, RAT9
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Nucleoporin NUP85
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NUP85, RAT9
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Nucleoporin SEH1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SEH1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P53011 (2-End)
      • expression tag (2)
      • expression tag (2)
  • Chain 'F':
    Compound: Nucleoporin SEH1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SEH1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P53011 (2-End)
      • expression tag (2)
      • expression tag (2)
  • Chain 'G':
    Compound: Nucleoporin NUP85
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NUP85, RAT9
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Nucleoporin NUP85
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NUP85, RAT9
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3f3fA (A:)
phmqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssi
vaidwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfap
ahlglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrf
speklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdg
ririfkiteklsplaseesltnsnmfdnsadvdmdaqgrsdsnteekaelqsnlqvells
ehddhngevwsvswnltgtilssagddgkvrlwkatysnefkcmsvitaqq

    Sequence, based on observed residues (ATOM records):
    >3f3fA (A:)
hmqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssiv
aidwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfapa
hlglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrfs
peklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdgr
irifkiteklqsnlqvellsehddhngevwsvswnltgtilssagddgkvrlwkatysne
fkcmsvit

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3f3fB (B:)
phmqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssi
vaidwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfap
ahlglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrf
speklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdg
ririfkiteklsplaseesltnsnmfdnsadvdmdaqgrsdsnteekaelqsnlqvells
ehddhngevwsvswnltgtilssagddgkvrlwkatysnefkcmsvitaqq

    Sequence, based on observed residues (ATOM records):
    >3f3fB (B:)
phmqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssi
vaidwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfap
ahlglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrf
speklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdg
ririfkiteksnlqvellsehddhngevwsvswnltgtilssagddgkvrlwkatysnef
kcmsvit

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3f3fC (C:)
mtiddsnrllmdvdqfdflddgtaqlsnnktdeeeqlykrdpvsgailvpmtvndqpiek
ngdkmplkfklgplsyqnmafitakdkyklypvriprldtskefsayvsglfeiyrdlgd
drvfnvptigvvnsnfakehnatvnlameailnelevfigrvkdqdgrvnrfyeleeslt
vlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyieqvfsvkdstagkkvf
etqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsiellkqypkdss
stfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqysrtwyesfcgf
llyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvmesldsctaaft
amiceakglienifegeknsddysnednemledlfsyrngmasymlnsfafelcslgdke
lwpvaiglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyt
tlgnqmlsahniiesianfsragkyelvks

    Sequence, based on observed residues (ATOM records):
    >3f3fC (C:)
ilvpmtvndqpiekngdkmplkfklgplsyqnmafitakdkyklypvriprldtskefsa
yvsglfeiyrdlgddrvfnvvnsnfakehnatvnlameailnelevfigrvkdqdgrvnr
fyeleesltvlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyieqvfsva
gkkvfetqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsiellkqy
pkdssstfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqysrtwye
sfcgfllyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvmesldsc
taaftamiceakglienifegledlfsyrngmasymlnsfafelcslgdkelwpvaigli
alsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyttlgn

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3f3fD (D:)
mtiddsnrllmdvdqfdflddgtaqlsnnktdeeeqlykrdpvsgailvpmtvndqpiek
ngdkmplkfklgplsyqnmafitakdkyklypvriprldtskefsayvsglfeiyrdlgd
drvfnvptigvvnsnfakehnatvnlameailnelevfigrvkdqdgrvnrfyeleeslt
vlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyieqvfsvkdstagkkvf
etqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsiellkqypkdss
stfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqysrtwyesfcgf
llyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvmesldsctaaft
amiceakglienifegeknsddysnednemledlfsyrngmasymlnsfafelcslgdke
lwpvaiglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyt
tlgnqmlsahniiesianfsragkyelvks

    Sequence, based on observed residues (ATOM records):
    >3f3fD (D:)
sgailvpmtvndqpiekngdkmplkfklgplsyqnmafitakdkyklypvriprldtske
fsayvsglfeiyrdlgddrvfnvnsnfakehnatvnlameailnelevfigrvkdqdgrv
nrfyeleesltvlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyieqvfs
vkdstagkkvfetqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsi
ellkqypkdssstfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqy
srtwyesfcgfllyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvm
esldsctaaftamiceakglienifegeknsddnemledlfsyrngmasymlnsfafelc
slgdkelwpvaiglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpei
akeiyttlgnqmlsa

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3f3fE (E:)
phmqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssi
vaidwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfap
ahlglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrf
speklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdg
ririfkiteklsplaseesltnsnmfdnsadvdmdaqgrsdsnteekaelqsnlqvells
ehddhngevwsvswnltgtilssagddgkvrlwkatysnefkcmsvitaqq

    Sequence, based on observed residues (ATOM records):
    >3f3fE (E:)
phmqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssi
vaidwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfap
ahlglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrf
speklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdg
ririfkiteknlqvellsehddhngevwsvswnltgtilssagddgkvrlwkatysnefk
cmsvit

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3f3fF (F:)
phmqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssi
vaidwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfap
ahlglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrf
speklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdg
ririfkiteklsplaseesltnsnmfdnsadvdmdaqgrsdsnteekaelqsnlqvells
ehddhngevwsvswnltgtilssagddgkvrlwkatysnefkcmsvitaqq

    Sequence, based on observed residues (ATOM records):
    >3f3fF (F:)
hmqpfdsghddlvhdvvydfygrhvatcssdqhikvfkldkdtsnwelsdswrahdssiv
aidwaspeygriiasasydktvklweedpdqeecsgrrwnklctlndskgslysvkfapa
hlglklaclgndgilrlydalepsdlrswtltsemkvlsippanhlqsdfclswcpsrfs
peklavsaleqaiiyqrgkdgklhvaaklpghkslirsiswapsigrwyqliatgckdgr
irifkiteknlqvellsehddhngevwsvswnltgtilssagddgkvrlwkatysnefkc
msvita

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3f3fG (G:)
mtiddsnrllmdvdqfdflddgtaqlsnnktdeeeqlykrdpvsgailvpmtvndqpiek
ngdkmplkfklgplsyqnmafitakdkyklypvriprldtskefsayvsglfeiyrdlgd
drvfnvptigvvnsnfakehnatvnlameailnelevfigrvkdqdgrvnrfyeleeslt
vlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyieqvfsvkdstagkkvf
etqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsiellkqypkdss
stfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqysrtwyesfcgf
llyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvmesldsctaaft
amiceakglienifegeknsddysnednemledlfsyrngmasymlnsfafelcslgdke
lwpvaiglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyt
tlgnqmlsahniiesianfsragkyelvks

    Sequence, based on observed residues (ATOM records):
    >3f3fG (G:)
ngdkmplkfklgplsyqnmafitakdkyklypvriprldtskefsayvsglfeiyrdlgd
drvfnvnsnfakehnatvnlameailnelevfigrvkdqdgrvnrfyeleesltvlnclr
tmyfildgqdveenrsefiesllnwinrsdgepdeeyieqvfsvkdsagkkvfetqyfwk
llnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsiellkqypkdssstfrewk
nlvlklsqafgssatdisgelrdyiedfllviggnqrkilqysrtwyesfcgfllyyips
lelsaeylqmsleanvvditndweqpcvdiisgkihsilpvmesldsctaaftamiceak
glienifegeknsdmledlfsyrngmasymlnsfafelcslgdkelwpvaiglialsatg
trsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyttlgnqmlsahn

  • Chain 'H':
    Sequence, based on SEQRES records:
    >3f3fH (H:)
mtiddsnrllmdvdqfdflddgtaqlsnnktdeeeqlykrdpvsgailvpmtvndqpiek
ngdkmplkfklgplsyqnmafitakdkyklypvriprldtskefsayvsglfeiyrdlgd
drvfnvptigvvnsnfakehnatvnlameailnelevfigrvkdqdgrvnrfyeleeslt
vlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyieqvfsvkdstagkkvf
etqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsiellkqypkdss
stfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqysrtwyesfcgf
llyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvmesldsctaaft
amiceakglienifegeknsddysnednemledlfsyrngmasymlnsfafelcslgdke
lwpvaiglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakeiyt
tlgnqmlsahniiesianfsragkyelvks

    Sequence, based on observed residues (ATOM records):
    >3f3fH (H:)
gailvpmtvndqpiekngdkmplkfklgplsyqnmafitakdkyklypvriprldtskef
sayvsglfeiyrdlgddrvfnvvnsnfakehnatvnlameailnelevfigrvkdqdgrv
nrfyeleesltvlnclrtmyfildgqdveenrsefiesllnwinrsdgepdeeyieqvfs
vkdstagkkvfetqyfwkllnqlvlrgllsqaigciersdllpylsdtcavsfdavsdsi
ellkqypkdssstfrewknlvlklsqafgssatdisgelrdyiedfllviggnqrkilqy
srtwyesfcgfllyyipslelsaeylqmsleanvvditndweqpcvdiisgkihsilpvm
esldsctaaftamiceakglienifegeknsmledlfsyrngmasymlnsfafelcslgd
kelwpvaiglialsatgtrsakkmviaellphypfvtnddiewmlsicvewrlpeiakei
yttlgnq