PDB entry 3f2o

View 3f2o on RCSB PDB site
Description: Crystal Structure of human splA/ryanodine receptor domain and SOCS box containing 1 (SPSB1) in complex with a 20-residue VASA peptide
Deposited on 2008-10-30, released 2008-12-09
The last revision was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.182
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: spry domain-containing socs box protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: SPSB1, SSB1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: spry domain-containing socs box protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: SPSB1, SSB1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 20-mer peptide from ATP-dependent RNA helicase vasa
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 20-mer peptide from ATP-dependent RNA helicase vasa
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3f2oA (A:)
mhhhhhhssgvdlgtenlyfqsmqelqgldyckptrldllldmppvsydvqllhswnnnd
rslnvfvkeddklifhrhpvaqstdairgkvgytrglhvwqitwamrqrgthavvgvata
daplhsvgyttlvgnnheswgwdlgrnrlyhdgknqpsktypaflepdetfivpdsflva
ldmddgtlsfivdgqymgvafrglkgkklypvvsavwghceirmrylngldpe

    Sequence, based on observed residues (ATOM records):
    >3f2oA (A:)
yckptrldllldmppvsydvqllhswnnndrslnvfvkeddklifhrhpvaqstdairgk
vgytrglhvwqitwamrqrgthavvgvatadaplhsvgyttlvgnnheswgwdlgrnrly
hdgknqpsktypaflepdetfivpdsflvaldmddgtlsfivdgqymgvafrglkgkkly
pvvsavwghceirmrylngldpe

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3f2oB (B:)
mhhhhhhssgvdlgtenlyfqsmqelqgldyckptrldllldmppvsydvqllhswnnnd
rslnvfvkeddklifhrhpvaqstdairgkvgytrglhvwqitwamrqrgthavvgvata
daplhsvgyttlvgnnheswgwdlgrnrlyhdgknqpsktypaflepdetfivpdsflva
ldmddgtlsfivdgqymgvafrglkgkklypvvsavwghceirmrylngldpe

    Sequence, based on observed residues (ATOM records):
    >3f2oB (B:)
dyckptrldllldmppvsydvqllhswnnndrslnvfvkeddklifhrhpvaqstdairg
kvgytrglhvwqitwamrqrgthavvgvatadaplhsvgyttlvgnnheswgwdlgrnrl
yhdgknqpsktypaflepdetfivpdsflvaldmddgtlsfivdgqymgvafrglkgkkl
ypvvsavwghceirmrylngldpe

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3f2oC (C:)
dinnnnnivedverkrefyi

    Sequence, based on observed residues (ATOM records):
    >3f2oC (C:)
dinnnnnivedverkref

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3f2oD (D:)
dinnnnnivedverkrefyi

    Sequence, based on observed residues (ATOM records):
    >3f2oD (D:)
dinnnnnivedverk