PDB entry 3f0y

View 3f0y on RCSB PDB site
Description: Crystal structure of the human Adenovirus type 14 fiber knob
Class: viral protein
Keywords: adenovirus, Ad14, CD46, trimer, fiber, knob, VIRAL PROTEIN
Deposited on 2008-10-27, released 2008-11-25
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.189
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: fiber protein
    Species: Human adenovirus 14 [TaxId:10521]
    Gene: Fiber, L5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3f0ya_
  • Chain 'B':
    Compound: fiber protein
    Species: Human adenovirus 14 [TaxId:10521]
    Gene: Fiber, L5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3f0yb_
  • Chain 'C':
    Compound: fiber protein
    Species: Human adenovirus 14 [TaxId:10521]
    Gene: Fiber, L5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3f0yc_
  • Chain 'D':
    Compound: fiber protein
    Species: Human adenovirus 14 [TaxId:10521]
    Gene: Fiber, L5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3f0yd_
  • Chain 'E':
    Compound: fiber protein
    Species: Human adenovirus 14 [TaxId:10521]
    Gene: Fiber, L5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3f0ye_
  • Chain 'F':
    Compound: fiber protein
    Species: Human adenovirus 14 [TaxId:10521]
    Gene: Fiber, L5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3f0yf_
  • Chain 'G':
    Compound: fiber protein
    Species: Human adenovirus 14 [TaxId:10521]
    Gene: Fiber, L5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3f0yg_
  • Chain 'H':
    Compound: fiber protein
    Species: Human adenovirus 14 [TaxId:10521]
    Gene: Fiber, L5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3f0yh_
  • Chain 'I':
    Compound: fiber protein
    Species: Human adenovirus 14 [TaxId:10521]
    Gene: Fiber, L5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3f0yi_
  • Heterogens: GOL, IMD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3f0yA (A:)
    gshmgnniciddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvig
    vsnnfnmlttyrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmp
    sttaypfnnnsrekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswn
    tgdapegqtsattlvtspftfyyiredd
    

    Sequence, based on observed residues (ATOM records): (download)
    >3f0yA (A:)
    ddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvigvsnnfnmltt
    yrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmpsttaypfnnn
    srekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswntgdapegqts
    attlvtspftfyyiredd
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3f0yB (B:)
    gshmgnniciddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvig
    vsnnfnmlttyrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmp
    sttaypfnnnsrekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswn
    tgdapegqtsattlvtspftfyyiredd
    

    Sequence, based on observed residues (ATOM records): (download)
    >3f0yB (B:)
    ddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvigvsnnfnmltt
    yrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmpsttaypfnnn
    srekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswntgdapegqts
    attlvtspftfyyiredd
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3f0yC (C:)
    gshmgnniciddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvig
    vsnnfnmlttyrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmp
    sttaypfnnnsrekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswn
    tgdapegqtsattlvtspftfyyiredd
    

    Sequence, based on observed residues (ATOM records): (download)
    >3f0yC (C:)
    ddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvigvsnnfnmltt
    yrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmpsttaypfnnn
    srekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswntgdapegqts
    attlvtspftfyyiredd
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3f0yD (D:)
    gshmgnniciddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvig
    vsnnfnmlttyrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmp
    sttaypfnnnsrekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswn
    tgdapegqtsattlvtspftfyyiredd
    

    Sequence, based on observed residues (ATOM records): (download)
    >3f0yD (D:)
    ddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvigvsnnfnmltt
    yrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmpsttaypfnnn
    srekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswntgdapegqts
    attlvtspftfyyiredd
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3f0yE (E:)
    gshmgnniciddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvig
    vsnnfnmlttyrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmp
    sttaypfnnnsrekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswn
    tgdapegqtsattlvtspftfyyiredd
    

    Sequence, based on observed residues (ATOM records): (download)
    >3f0yE (E:)
    ddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvigvsnnfnmltt
    yrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmpsttaypfnnn
    srekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswntgdapegqts
    attlvtspftfyyiredd
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3f0yF (F:)
    gshmgnniciddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvig
    vsnnfnmlttyrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmp
    sttaypfnnnsrekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswn
    tgdapegqtsattlvtspftfyyiredd
    

    Sequence, based on observed residues (ATOM records): (download)
    >3f0yF (F:)
    ddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvigvsnnfnmltt
    yrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmpsttaypfnnn
    srekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswntgdapegqts
    attlvtspftfyyiredd
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3f0yG (G:)
    gshmgnniciddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvig
    vsnnfnmlttyrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmp
    sttaypfnnnsrekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswn
    tgdapegqtsattlvtspftfyyiredd
    

    Sequence, based on observed residues (ATOM records): (download)
    >3f0yG (G:)
    iddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvigvsnnfnmlt
    tyrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmpsttaypfnn
    nsrekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswntgdapegqt
    sattlvtspftfyyiredd
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3f0yH (H:)
    gshmgnniciddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvig
    vsnnfnmlttyrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmp
    sttaypfnnnsrekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswn
    tgdapegqtsattlvtspftfyyiredd
    

    Sequence, based on observed residues (ATOM records): (download)
    >3f0yH (H:)
    ddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvigvsnnfnmltt
    yrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmpsttaypfnnn
    srekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswntgdapegqts
    attlvtspftfyyiredd
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >3f0yI (I:)
    gshmgnniciddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvig
    vsnnfnmlttyrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmp
    sttaypfnnnsrekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswn
    tgdapegqtsattlvtspftfyyiredd
    

    Sequence, based on observed residues (ATOM records): (download)
    >3f0yI (I:)
    ddnintlwtgvnpteancqmmdssesndckliltlvktgalvtafvyvigvsnnfnmltt
    yrninftaelffdsagnlltslsslktplnhksgqnmatgaitnaksfmpsttaypfnnn
    srekenyiygtchytasdhtafpidisvmlnqrairadtsyciritwswntgdapegqts
    attlvtspftfyyiredd