PDB entry 3f0f

View 3f0f on RCSB PDB site
Description: Co-crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Burkholderia pseudomallei with hydrolyzed CDP
Class: lyase
Keywords: SSGCID, NIAID, Burkholderia pseudomallei, Isoprene biosynthesis, Lyase, Metal-binding, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease
Deposited on 2008-10-24, released 2008-11-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 2.09 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: ispF, mecS, BPSL2098
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3f0fa_
  • Chain 'B':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: ispF, mecS, BPSL2098
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3f0fb_
  • Chain 'C':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: ispF, mecS, BPSL2098
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3f0fc_
  • Heterogens: GOL, MG, ZN, C5P, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3f0fA (A:)
mahhhhhhmgtleaqtqgpgsmdfrigqgydvhqlvpgrpliiggvtipyergllghsda
dvllhaitdalfgaaalgdigrhfsdtdprfkgadsrallrecasrvaqagfairnvdst
iiaqapklaphidamraniaadldlpldrvnvkaktneklgylgrgegieaqaaalvvre
aaa

    Sequence, based on observed residues (ATOM records): (download) 
    >3f0fA (A:)
mdfrigqgydvhqlvpgrpliiggvtipyergllghsdadvllhaitdalfgaaalgdig
rhfsdtdprfkgadsrallrecasrvaqagfairnvdstiiaqapklaphidamraniaa
dldlpldrvnvkaktneklgylgrgegieaqaaalvvre

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3f0fB (B:)
mahhhhhhmgtleaqtqgpgsmdfrigqgydvhqlvpgrpliiggvtipyergllghsda
dvllhaitdalfgaaalgdigrhfsdtdprfkgadsrallrecasrvaqagfairnvdst
iiaqapklaphidamraniaadldlpldrvnvkaktneklgylgrgegieaqaaalvvre
aaa

    Sequence, based on observed residues (ATOM records): (download) 
    >3f0fB (B:)
mdfrigqgydvhqlvpgrpliiggvtipyergllghsdadvllhaitdalfgaaalgdig
rhfsdtdprfkgadsrallrecasrvaqagfairnvdstiiaqapklaphidamraniaa
dldlpldrvnvkaktneklgylgrgegieaqaaalvvre

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3f0fC (C:)
mahhhhhhmgtleaqtqgpgsmdfrigqgydvhqlvpgrpliiggvtipyergllghsda
dvllhaitdalfgaaalgdigrhfsdtdprfkgadsrallrecasrvaqagfairnvdst
iiaqapklaphidamraniaadldlpldrvnvkaktneklgylgrgegieaqaaalvvre
aaa

    Sequence, based on observed residues (ATOM records): (download) 
    >3f0fC (C:)
mdfrigqgydvhqlvpgrpliiggvtipyergllghsdadvllhaitdalfgaaalgdig
rhfsprfkgadsrallrecasrvaqagfairnvdstiiaqapklaphidamraniaadld
lpldrvnvkaktneklgylgrgegieaqaaalvvre