PDB entry 3f0d

View 3f0d on RCSB PDB site
Description: High resolution crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphatase synthase from Burkholderia pseudomallei
Class: lyase
Keywords: SSGCID, NIAID, Burkholderia pseudomallei, Isoprene biosynthesis, Lyase, Metal-binding, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease
Deposited on 2008-10-24, released 2008-11-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-10-30, with a file datestamp of 2013-10-25.
Experiment type: XRAY
Resolution: 1.2 Å
R-factor: 0.186
AEROSPACI score: 0.71 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: ispF, mecS, BPSL2098
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3f0da_
  • Chain 'B':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: ispF, mecS, BPSL2098
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3f0db_
  • Chain 'C':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: ispF, mecS, BPSL2098
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3f0dc_
  • Chain 'D':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: ispF, mecS, BPSL2098
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3f0dd_
  • Chain 'E':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: ispF, mecS, BPSL2098
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3f0de_
  • Chain 'F':
    Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: ispF, mecS, BPSL2098
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3f0df_
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3f0dA (A:)
mahhhhhhmgtleaqtqgpgsmdfrigqgydvhqlvpgrpliiggvtipyergllghsda
dvllhaitdalfgaaalgdigrhfsdtdprfkgadsrallrecasrvaqagfairnvdst
iiaqapklaphidamraniaadldlpldrvnvkaktneklgylgrgegieaqaaalvvre
aaa

    Sequence, based on observed residues (ATOM records): (download) 
    >3f0dA (A:)
mdfrigqgydvhqlvpgrpliiggvtipyergllghsdadvllhaitdalfgaaalgdig
rhfsdfkgadsrallrecasrvaqagfairnvdstiiaqapklaphidamraniaadldl
pldrvnvkaktneklgylgrgegieaqaaalvvre

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3f0dB (B:)
mahhhhhhmgtleaqtqgpgsmdfrigqgydvhqlvpgrpliiggvtipyergllghsda
dvllhaitdalfgaaalgdigrhfsdtdprfkgadsrallrecasrvaqagfairnvdst
iiaqapklaphidamraniaadldlpldrvnvkaktneklgylgrgegieaqaaalvvre
aaa

    Sequence, based on observed residues (ATOM records): (download) 
    >3f0dB (B:)
mdfrigqgydvhqlvliiggvtigllsdadvllhaitdalfgaaalgdigrhfsdfkgad
srallrecasrvaqagfairnvdstiiaqapklaphidamraniaadldlpldrvnvkak
tneklgylgrgegieaqaaalvvr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3f0dC (C:)
mahhhhhhmgtleaqtqgpgsmdfrigqgydvhqlvpgrpliiggvtipyergllghsda
dvllhaitdalfgaaalgdigrhfsdtdprfkgadsrallrecasrvaqagfairnvdst
iiaqapklaphidamraniaadldlpldrvnvkaktneklgylgrgegieaqaaalvvre
aaa

    Sequence, based on observed residues (ATOM records): (download) 
    >3f0dC (C:)
mdfrigqgydvhqlvpgrpliiggvtipyergllghsdadvllhaitdalfgaaalgdig
rhfdsrallrecasrvaqagfairnvdstiiaqapklaphidamraniaadldlpldrvn
vkaktneklgylgrgegieaqaaalvvr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3f0dD (D:)
mahhhhhhmgtleaqtqgpgsmdfrigqgydvhqlvpgrpliiggvtipyergllghsda
dvllhaitdalfgaaalgdigrhfsdtdprfkgadsrallrecasrvaqagfairnvdst
iiaqapklaphidamraniaadldlpldrvnvkaktneklgylgrgegieaqaaalvvre
aaa

    Sequence, based on observed residues (ATOM records): (download) 
    >3f0dD (D:)
mdfrigqgydvhqlvpgrpliiggvtipyergllghsdadvllhaitdalfgaaalgdig
rhfsdprfkgadsrallrecasrvaqagfairnvdstiiaqapklaphidamraniaadl
dlpldrvnvkaktneklgylgrgegieaqaaalvvre

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3f0dE (E:)
mahhhhhhmgtleaqtqgpgsmdfrigqgydvhqlvpgrpliiggvtipyergllghsda
dvllhaitdalfgaaalgdigrhfsdtdprfkgadsrallrecasrvaqagfairnvdst
iiaqapklaphidamraniaadldlpldrvnvkaktneklgylgrgegieaqaaalvvre
aaa

    Sequence, based on observed residues (ATOM records): (download) 
    >3f0dE (E:)
mdfrigqgydvhqlvpgrpliiggvtipyergllghsdadvllhaitdalfgaaalgdig
dsrallrecasrvaqagfairnvdstiiaqapklaphidamraniaadldlpldrvnvka
ktneklgylgrgegieaqaaalvvr

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3f0dF (F:)
mahhhhhhmgtleaqtqgpgsmdfrigqgydvhqlvpgrpliiggvtipyergllghsda
dvllhaitdalfgaaalgdigrhfsdtdprfkgadsrallrecasrvaqagfairnvdst
iiaqapklaphidamraniaadldlpldrvnvkaktneklgylgrgegieaqaaalvvre
aaa

    Sequence, based on observed residues (ATOM records): (download) 
    >3f0dF (F:)
mdfrigqgydvhqlvpgrpliiggvtipyergllghsdadvllhaitdalfgaaalgdig
rhfdsrallrecasrvaqagfairnvdstiiaqapklaphidamraniaadldlpldrvn
vkaktneklgylgrgegieaqaaalvvr