PDB entry 3ezj
View 3ezj on RCSB PDB site
Description: Crystal structure of the N-terminal domain of the secretin GspD from ETEC determined with the assistance of a nanobody
Class: protein transport
Keywords: general secretory pathway, secretin, single chain antibody, protein transport, immune system, complex
Deposited on
2008-10-22, released
2009-02-17
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-01-24, with a file datestamp of
2018-01-19.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.17
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: General secretion pathway protein GspD
Species: Escherichia coli [TaxId:316401]
Gene: gspD
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: nanobody nbgspd_7
Species: LAMA GLAMA [TaxId:9844]
Gene: NBGSPD_7
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3ezjb1, d3ezjb2, d3ezjb3 - Chain 'C':
Compound: General secretion pathway protein GspD
Species: Escherichia coli [TaxId:316401]
Gene: gspD
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: nanobody nbgspd_7
Species: LAMA GLAMA [TaxId:9844]
Gene: NBGSPD_7
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3ezjd1, d3ezjd2, d3ezjd3 - Chain 'E':
Compound: General secretion pathway protein GspD
Species: Escherichia coli [TaxId:316401]
Gene: gspD
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: nanobody nbgspd_7
Species: LAMA GLAMA [TaxId:9844]
Gene: NBGSPD_7
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3ezjf1, d3ezjf2, d3ezjf3 - Chain 'G':
Compound: General secretion pathway protein GspD
Species: Escherichia coli [TaxId:316401]
Gene: gspD
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: nanobody nbgspd_7
Species: LAMA GLAMA [TaxId:9844]
Gene: NBGSPD_7
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3ezjh1, d3ezjh2, d3ezjh3 - Heterogens: PO4, CL, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3ezjB (B:)
qvqlqesggglvqaggslrlscaasgsifsinsmdwdrqapgkqrelvatitsggstnya
dsvkgrftisrdnakntvylqmnslkpedtavyycnanvktwagmtrdywgqgtqvtvss
hhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3ezjB (B:)
qvqlqesggglvqaggslrlscaasgsifsinsmdwdrqapgkqrelvatitsggstnya
dsvkgrftisrdnakntvylqmnslkpedtavyycnanvktwagmtrdywgqgtqvtvss
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3ezjD (D:)
qvqlqesggglvqaggslrlscaasgsifsinsmdwdrqapgkqrelvatitsggstnya
dsvkgrftisrdnakntvylqmnslkpedtavyycnanvktwagmtrdywgqgtqvtvss
hhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3ezjD (D:)
qvqlqesggglvqaggslrlscaasgsifsinsmdwdrqapgkqrelvatitsggstnya
dsvkgrftisrdnakntvylqmnslkpedtavyycnanvktwagmtrdywgqgtqvtvss
- Chain 'E':
No sequence available.
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3ezjF (F:)
qvqlqesggglvqaggslrlscaasgsifsinsmdwdrqapgkqrelvatitsggstnya
dsvkgrftisrdnakntvylqmnslkpedtavyycnanvktwagmtrdywgqgtqvtvss
hhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3ezjF (F:)
qvqlqesggglvqaggslrlscaasgsifsinsmdwdrqapgkqrelvatitsggstnya
dsvkgrftisrdnakntvylqmnslkpedtavyycnanvktwagmtrdywgqgtqvtvss
- Chain 'G':
No sequence available.
- Chain 'H':
Sequence, based on SEQRES records: (download)
>3ezjH (H:)
qvqlqesggglvqaggslrlscaasgsifsinsmdwdrqapgkqrelvatitsggstnya
dsvkgrftisrdnakntvylqmnslkpedtavyycnanvktwagmtrdywgqgtqvtvss
hhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3ezjH (H:)
qvqlqesggglvqaggslrlscaasgsifsinsmdwdrqapgkqrelvatitsggstnya
dsvkgrftisrdnakntvylqmnslkpedtavyycnanvktwagmtrdywgqgtqvtvss