PDB entry 3evm
View 3evm on RCSB PDB site
Description: Crystal structure of the Mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with dCDP
Class: transferase
Keywords: phosphotransferase nucleotide binding, ATP-binding, Kinase, Magnesium, Metal-binding, Nucleotide metabolism, Nucleotide-binding, Phosphoprotein, Transferase
Deposited on
2008-10-13, released
2009-08-11
The last revision prior to the SCOPe 2.01 freeze date was dated
2009-11-03, with a file datestamp of
2009-10-30.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.179
AEROSPACI score: 0.52
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nucleoside diphosphate kinase
Species: Acanthamoeba polyphaga mimivirus [TaxId:212035]
Gene: MIMI_R418, NDK
Database cross-references and differences (RAF-indexed):
- Uniprot Q5UQL3 (6-End)
- expression tag (5)
- engineered (66)
- see remark 999 (96-102)
- engineered (115)
Domains in SCOPe 2.01: d3evma_ - Chain 'B':
Compound: Nucleoside diphosphate kinase
Species: Acanthamoeba polyphaga mimivirus [TaxId:212035]
Gene: MIMI_R418, NDK
Database cross-references and differences (RAF-indexed):
- Uniprot Q5UQL3 (6-End)
- expression tag (5)
- engineered (66)
- see remark 999 (96-102)
- engineered (115)
Domains in SCOPe 2.01: d3evmb_ - Heterogens: YYY, MG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3evmA (A:)
ykkaglqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehse
qsyfndlcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandigenli
hasdsedsavdeisiwfpetkmetdn
Sequence, based on observed residues (ATOM records): (download)
>3evmA (A:)
lqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehseqsyfn
dlcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandigenlihasds
edsavdeisiwfpe
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3evmB (B:)
ykkaglqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehse
qsyfndlcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandigenli
hasdsedsavdeisiwfpetkmetdn
Sequence, based on observed residues (ATOM records): (download)
>3evmB (B:)
lqrtlvlikpdaferslvaeimgriekknfkivsmkfwskaprnlieqhykehseqsyfn
dlcdfmvsgpiisivyegtdaiskirrlqgntnplasapgtirgdlandigenlihasds
edsavdeisiwfp