PDB entry 3ery

View 3ery on RCSB PDB site
Description: Different thermodynamic binding mechanisms and peptide fine specificities associated with a panel of structurally similar high-affinity T cell receptors
Deposited on 2008-10-03, released 2008-11-25
The last revision was dated 2009-03-17, with a file datestamp of 2009-03-13.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.232
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H-2 class I histocompatibility antigen
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 3ERY (0-173)
  • Chain 'B':
    Compound: H-2 class I histocompatibility antigen
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 3ERY (0-End)
  • Chain 'P':
    Compound: 2-oxoglutarate dehydrogenase E1 peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: 2-oxoglutarate dehydrogenase E1 peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >3eryA (A:)
gphsmryyetatsrrglgeprytsvgyvddkefvrfdsdaenpryepqvpwmeqegpeyw
eritqvakgqeqwfrvnlrtllgyynqsaggthtlqrmygcdvgsdgrllrgyeqfaydg
cdyialnedlrtwtaadmaaqitrrkweqagaaeyyraylegecvewlhrylkn

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3eryB (B:)
gphsmryyetatsrrglgeprytsvgyvddkefvrfdsdaenpryepqvpwmeqegpeyw
eritqvakgqeqwfrvnlrtllgyynqsaggthtlqrmygcdvgsdgrllrgyeqfaydg
cdyialnedlrtwtaadmaaqitrrkweqagaaeyyraylegecvewlhrylkn

    Sequence, based on observed residues (ATOM records):
    >3eryB (B:)
gphsmryyetatsrrglgeprytsvgyvddkefvrfdsdaritqvakgqeqwfrvnlrtl
lgyynqsaggthtlqrmygcdvgsdgrllrgyeqfaydgcdyialnedlrtwtaadmaaq
itrrkweqagaaeyyraylegecvewlhr

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >3eryP (P:)
qlspfpfdl

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >3eryQ (Q:)
qlspfpfdl